Protein

View in Explore
Genbank accession
YP_009017762.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPLITQTIKNLKGGISQQPDILRFPDQGQAQINGFSSEVEGLQKRPPSVHIKKLDTKHNGKPFVKLINRDQFERYYASFHPGGSLTVIDLDGVQKTVNAPQGFGYINTANPRTDLRMVTVADFTFVINKAVAVTMNGVQSFPGYRTNGRALVNVKGGQYSRTYSIEFNGGVQASYTTPNGSDPSHAAQIDTQYIAQQLGNALVAALGPSGWGIDVGPNYIFIEAPSASSVFNLKIRDGFNNGLMAGCIFEVQRFNMLPAQARDGYIVKVLGDPGSGADDYYARFDLARGVWVECQAPGTVGQFTKATMPHALVREANGTFTFREVDWQERPSGDADTSPEPSFVGQKINDIFFFRNRLGILAGENVILSASGEFFKFWPKSVVTAADTDPIDVAVSHNRVSTLHHAVSFAEELLLWSDQTQFILKSDGILSTKTVKVDTATEFESAIDARPVAAGRGVYFAAPRASFTSVRRYYAVQDTSAVKNAEDISAHVPSYIPNGVFFLGSSTTENVVTVLTEGAESRLYLYKYLYLQEQLVQQAWSHWEFGPGSRVLACDLIGAIMYILVDAPSGTFLESVEFTQNTKDFDFEPFRLYMDRKKQVENMTYNVDANETYVYLDDEYEGAMPFSGDYWLVSEEGRANFFPEPAGGWVPVDGKLVLPGDWTAETLIIGEAYTFEYEFSKLLLKVQDETGVRSEDVGRLQIQRAWVNYNNSGPFDVVVCDKFTYTMSGKKLGSYVLGDDVLDTGQFRFPVMTASDRCRVKIVSDNPGPVNLIGAGWIGKYNRREQAL
Physico‐chemical
properties
protein length:788 AA
molecular weight: 87194,97950 Da
isoelectric point:5,15231
aromaticity:0,11802
hydropathy:-0,22513

Domains

View on InterPro
Domain architecture
YP_009017762.1
1 788 aa
TTP 1–787 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009017762.1
1 788 aa
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9921
Central domain 143 347 206 0,0858
C-terminal 348 788 440 0,1614
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Ralstonia phage RSB2 [NCBI] · taxon 913183
Uroviricota Caudoviricetes Autographivirales Kelmasvirus Kelmasvirus RSB2
Host
Ralstonia solanacearum [NCBI] · taxon 305
cellular organisms Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales

Coding sequence (CDS)

Genbank protein accession
YP_009017762.1 [NCBI]
Genbank nucleotide accession
NC_023736 [NCBI]
CDS location
range 25227 -> 27593
strand +
CDS
ATGCCACTCATTACACAGACAATCAAGAACCTGAAGGGCGGCATCTCCCAGCAGCCCGACATCCTGCGCTTCCCCGACCAAGGGCAGGCCCAGATCAACGGGTTCTCCTCGGAGGTAGAGGGCTTGCAGAAGCGCCCGCCTTCTGTCCACATCAAGAAGCTCGACACCAAGCATAACGGGAAGCCGTTCGTGAAGCTGATCAACCGTGACCAGTTCGAGCGGTACTATGCGTCCTTCCACCCGGGAGGCTCCCTGACCGTGATCGACTTGGACGGCGTGCAGAAGACCGTCAACGCCCCGCAGGGCTTCGGCTACATCAACACCGCGAATCCCCGCACGGACCTCCGCATGGTCACCGTGGCGGACTTCACCTTCGTGATCAACAAGGCGGTCGCCGTGACAATGAACGGCGTGCAGTCCTTCCCGGGCTACCGCACCAACGGGCGCGCGCTGGTTAACGTTAAGGGCGGGCAGTACAGCCGCACCTACTCCATCGAGTTCAACGGTGGAGTCCAGGCCAGCTACACGACACCGAACGGTAGCGACCCCAGCCACGCAGCGCAGATCGACACCCAGTACATCGCCCAGCAGTTGGGCAACGCGCTTGTGGCCGCGCTGGGTCCCTCGGGGTGGGGCATTGATGTGGGGCCTAACTACATCTTCATTGAGGCCCCCTCCGCATCCTCGGTGTTCAACCTGAAGATTCGGGACGGCTTCAACAATGGCCTGATGGCCGGGTGCATCTTCGAGGTGCAACGGTTCAACATGCTGCCCGCTCAGGCCCGGGACGGCTACATCGTGAAGGTCCTCGGGGACCCCGGAAGTGGCGCCGACGACTACTACGCACGGTTCGATCTGGCCCGTGGTGTCTGGGTCGAGTGCCAAGCGCCGGGGACCGTGGGGCAGTTCACCAAGGCCACCATGCCGCACGCCCTTGTACGGGAAGCCAACGGGACCTTTACGTTCCGTGAGGTGGACTGGCAGGAGCGCCCCAGCGGCGATGCGGACACCAGCCCGGAACCCAGCTTCGTGGGCCAGAAGATCAACGACATCTTCTTCTTCCGTAACCGCTTGGGTATCCTCGCGGGCGAGAACGTGATCCTGTCGGCCTCGGGCGAGTTCTTCAAGTTCTGGCCCAAGTCGGTCGTGACTGCGGCGGACACCGACCCCATCGACGTGGCGGTCTCGCACAACCGCGTTAGCACCCTGCACCACGCCGTGTCGTTCGCGGAGGAGTTGCTGCTGTGGAGCGACCAGACCCAGTTCATCCTGAAGTCGGACGGCATCCTGTCCACGAAGACGGTCAAGGTAGACACGGCCACGGAGTTCGAGTCGGCCATCGACGCGCGCCCGGTAGCGGCGGGCCGTGGTGTGTACTTCGCAGCGCCCCGCGCCAGCTTCACCTCAGTGCGCCGGTACTACGCTGTGCAGGACACCTCAGCCGTTAAGAACGCCGAGGACATCTCCGCGCACGTCCCCAGCTACATCCCCAACGGGGTGTTCTTCCTCGGGTCGTCCACCACCGAGAACGTGGTCACTGTCCTGACAGAGGGCGCAGAGTCCCGGCTGTACCTCTACAAGTATCTCTACCTGCAAGAGCAGCTTGTGCAGCAGGCGTGGAGCCACTGGGAGTTCGGGCCGGGTTCTCGGGTCCTCGCGTGTGACCTCATTGGGGCCATCATGTACATCCTCGTGGATGCCCCCAGCGGGACCTTCCTTGAGTCCGTAGAGTTCACCCAGAACACGAAAGACTTCGACTTCGAACCGTTCCGGCTCTACATGGACCGTAAGAAGCAAGTGGAGAACATGACCTACAACGTGGACGCCAACGAGACCTACGTGTATCTGGACGACGAGTATGAGGGTGCAATGCCCTTCTCGGGCGACTACTGGCTGGTCAGCGAGGAAGGCCGCGCGAACTTCTTCCCGGAGCCTGCGGGCGGCTGGGTGCCGGTTGATGGGAAGCTGGTCCTCCCGGGCGACTGGACGGCTGAAACGCTGATCATCGGGGAAGCCTACACGTTCGAATACGAGTTCTCAAAGTTGCTCCTCAAGGTGCAGGACGAGACCGGCGTTCGGAGCGAGGACGTGGGCCGCCTCCAGATTCAACGGGCTTGGGTCAACTACAACAACTCCGGGCCGTTCGACGTAGTGGTGTGCGACAAGTTCACCTACACGATGTCCGGCAAGAAGCTGGGGTCCTACGTGCTGGGCGATGACGTGCTGGATACTGGGCAGTTCCGCTTCCCGGTGATGACCGCATCGGATCGCTGCCGCGTGAAGATCGTGTCGGATAACCCCGGCCCGGTGAACCTGATCGGCGCAGGCTGGATCGGCAAGTACAACCGCAGGGAACAAGCTCTTTAA

Genome Context

Tertiary structure

YP_009017762.1
ESMFold structure
Source ESMFold
pLDDT 89.0
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Genomic analysis of Ralstonia solanacearum phages RSB2 and RSB3 Kawasaki,T., Ishikawa,H., Shimizu,M., Omoto,W., Fujie,M. and Yamada,T. 2020 — GenBank