Phage RBP Database

Genbank accession

YP_007392815.1 [GenBank]

Protein name

tail assembly protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MSFNSRESSLADGQPVRLYQFSRGAIRWSYNSSDRDITYQNQIFRTVQGGITDNGIICSGDPQSDQFVITAPADLDVALLYKTRSPSGAIDLVVYDMHYGDAEAAVSWVGQIGDVDWPTVDSCRITCVSEDELMDQPGLIDTYCRTCTAVVGDHRCKVNLVPYRVTLTPQSISGWVISSGVVAGYADGWFTGGYVEWQVDGDNYDSRYIERHAGPDLYILGGTEGIPAGGQLRVYPGCDGLAQTCDDKFSNLPNFRGFNAMQGKSPFDGDQVW

Physico‐chemical properties

protein length:	273 AA
molecular weight:	29953,84070 Da
isoelectric point:	4,36685
aromaticity:	0,10989
hydropathy:	-0,28352

Domain architecture

YP_007392815.1

1 273 aa

ATT 32–159 · RBD 188–264 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR011928
Unmapped

IPR011928

PF09931
ATT

PF09931 IPR018964

YP_007392815.1

1273 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0733
STR

DC_0733

YP_007392815.1

1273 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR011928	Unmapped	-	19	271	InterPro	Bacteriophage phiJL001, Gp84	-	-	-	-
PF09931	ATT	DC_0354	32	159	InterPro cluster	PF09931	N-terminal	High	Text match	7 proteins / 7 hits
IPR018964	RBD	DC_0718	188	264	InterPro cluster	Bacteriophage phiJL001, Gp84, C-terminal	C-terminal	Low	Positional only	19 proteins / 19 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_007392815.1

1 273 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	271	271	0,7431
Central domain	272	271	1	0,1094
C-terminal	272	273	1	0,7516

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary|CONSTRAINT VIOLATION: Final C-terminal (1 AA) is still below minimum (10 AA). Sequence may be too short.

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pseudomonas phage JBD24 [NCBI] · taxon 1223259

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Pseudomonas aeruginosa PA14 [NCBI] · taxon 652611

Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas

Genbank protein accession

YP_007392815.1 [NCBI]

Genbank nucleotide accession

NC_020203 [NCBI]

CDS location

range 31774 -> 32595
strand +

CDS

ATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGGCTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATCACCTACCAGAACCAGATTTTCCGCACGGTCCAGGGCGGCATCACCGACAACGGGATCATCTGTTCCGGCGATCCGCAGTCCGACCAGTTCGTCATCACCGCGCCGGCCGACCTCGATGTCGCGCTGCTGTACAAGACCCGGTCGCCGAGCGGTGCCATCGACCTGGTCGTCTACGACATGCACTACGGCGATGCCGAGGCAGCGGTTTCATGGGTGGGTCAGATTGGCGATGTGGACTGGCCGACCGTGGATAGCTGCCGCATAACGTGCGTGTCGGAAGATGAGCTGATGGATCAGCCCGGCTTGATCGACACCTACTGCCGCACCTGCACGGCAGTCGTTGGCGACCATCGCTGCAAGGTCAACCTCGTTCCGTATCGCGTGACGCTGACGCCGCAGAGCATCAGCGGCTGGGTGATCTCCAGCGGCGTGGTCGCCGGCTATGCCGATGGCTGGTTTACCGGGGGCTATGTCGAGTGGCAAGTGGACGGCGACAACTACGATAGCCGCTACATCGAGCGGCACGCCGGACCCGATCTTTACATCCTGGGCGGCACCGAGGGCATTCCGGCAGGTGGCCAACTGCGGGTTTATCCGGGTTGCGACGGGCTCGCGCAGACCTGCGACGACAAATTCAGCAACCTCCCCAACTTCAGGGGGTTTAACGCGATGCAAGGCAAGTCGCCGTTCGATGGCGACCAGGTCTGGTGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)