Protein

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Genbank accession
YP_009800164.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MATKISFSRNSTATYIGKDGQLKTAAANEPRFEKEGLLVEGKSTNLHTMSETTVSDGNGVGIVTATTLDGSPALLFQNTNGVWASVPLGTPTLTIGSVYTVSVFTDKSIAECAIDVISGRNSPRVTLTSEIKLGNGLYRRWASFTAISSAITCHYYVATVSGGCKVGRIQVEALPFASSYIPTNGAAVTRAQDICWIPLENNGLPGVDNEKTVSLTSDIIGISGSFNFILSTPWGAIDYTATHERVAGRMPELQMNTPVALKTSVRKVARFTKGGGCAAIFGDTQKVGPTADWSIGTSRIMIGSMNESGANPHFGHVKDLKIWLKPLSDSQMRAIA
Physico‐chemical
properties
protein length:336 AA
molecular weight: 35645,12190 Da
isoelectric point:8,74902
aromaticity:0,07143
hydropathy:-0,02143

Domains

Domains [InterPro]
DC_1416
STR
1–336
DC_1416
NF048003
Unmapped
38–191
NF048003
YP_009800164.1
1 336
Architecture
STR
STR 1-336
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009800164.1
1 336
Domain Start End Length (AA) Confidence
N-terminal 1 208 208 0,0032
Central domain 209 325 118 0,1610
C-terminal 326 336 10 0,9974
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-208
Central
209-325
C-terminal
326-336

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage AhSzq-1
[NCBI] 		2138298 Uroviricota > Caudoviricetes > Demerecviridae > Shenzhenvirus AhSzq1 >
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009800164.1 [NCBI]
Genbank nucleotide accession
NC_047949 [NCBI]
CDS location
range 77931 -> 78941
strand -
CDS
GTGGCTACCAAGATTAGCTTTTCCCGCAACTCAACCGCGACCTACATCGGCAAGGATGGTCAGCTGAAAACCGCCGCCGCTAATGAGCCACGCTTTGAGAAAGAGGGTCTGCTGGTTGAGGGGAAGAGCACCAATCTCCACACCATGTCTGAGACAACGGTATCAGATGGAAATGGAGTTGGTATCGTTACAGCAACAACGCTGGATGGAAGCCCCGCGCTACTTTTTCAAAATACGAATGGCGTGTGGGCGTCAGTTCCGCTAGGCACTCCAACGTTAACAATTGGCAGCGTATATACGGTTAGTGTGTTTACTGATAAATCCATTGCCGAGTGCGCAATAGATGTAATTTCAGGGCGAAACTCTCCAAGAGTCACCCTAACTTCCGAGATTAAGCTTGGCAACGGCCTATACAGAAGATGGGCATCGTTTACAGCTATAAGCTCTGCAATCACATGCCACTATTACGTTGCAACCGTTTCAGGCGGGTGTAAGGTTGGCAGAATACAAGTTGAGGCTCTCCCATTCGCTAGCTCATATATCCCGACAAATGGCGCTGCGGTAACTCGGGCGCAGGACATTTGCTGGATACCATTAGAGAACAACGGGCTTCCTGGGGTTGATAATGAAAAAACGGTATCCCTCACTAGCGATATCATCGGTATTAGCGGATCGTTTAACTTTATACTATCAACCCCGTGGGGTGCCATTGACTACACAGCCACTCACGAGCGCGTAGCAGGACGTATGCCAGAGCTGCAAATGAATACCCCCGTTGCACTAAAAACATCGGTGAGAAAAGTCGCGAGGTTCACTAAAGGGGGAGGGTGCGCCGCGATTTTTGGCGATACACAAAAGGTCGGCCCGACTGCGGACTGGTCAATTGGTACATCACGAATCATGATCGGCAGCATGAATGAGTCGGGTGCAAACCCTCATTTCGGTCATGTTAAAGACCTGAAGATCTGGTTAAAACCACTCTCTGACTCTCAAATGAGGGCTATCGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
49eb761bd238db9b64c7bee0020bcb62db16c9ca4a5a271eadb0e56da1176924
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8554
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of T5-related Aeromonas hydrophila phages AhSzq-1 and AhSzw-1 and proposal to be two new species Chen,L., Yuan,S. and Ma,Y. 2018-03-19 — GenBank