Phage RBP Database

Genbank accession

XHB26124.1 [GenBank]

Protein name

endopeptidase

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,54

TF

Evidence RBPdetect2

Probability 0,89

Seq2Symm

C3 confidence 0,964 truncated

C3	0,964
C1	0,046
C2	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MTTFLDHKDNEFEAQAVVKTTNAVNGERSLSGTIYTNEEVLNKVDKGWKLEFDDEYYKIIYAKPTDTGNKIQVEFDAVHQFFYDFDKSSLHKQLNDGSHTFQAYLNFIFNGSGYTYSLEVVVKSFEKQSFGYKSRLDLFNDIIKSAGVEFFVRGKVVRILQKTGTDLSTIVRKNFNMNEIIIEKKINDFITYQKGFGAWTDQEDHSKGRLEVEYESPLAKEYGRIEGEPVVDERYTNADNLKSVLKQNVDSSYNIAVKIDIEDLTKAGYQYTQPIAGDYIMAINETLGFKEKIRIVSFESEYDVTGQLINHKVICNDIGTIKKQTVAVSQLSSKINNNQEILDNAVFKANQALASADGKNTNYYGTEMPVDDPKGTLRKGDLLFLTVGDTTRMYFWNGAEWIINSFSDDIDFVKKEITNKIIEVNAAMKLADEQLTEKYNAIVAKNVSQDELINQAKNLSDSAKKDATEALTNLISESKKLTDKMSALSKTEVEHYSTTNLQLTQLDGTVKGLQTSYEALLKKDGDITQTLANYKQTIDQNSTSITANKKTVDGTLSSLQTQVTQTANEITTRLSQTNIEALITSKSAVIADNKVKETADSFSREITRVNNTIDNLKIGTVNLLSGTKNWTKNWFNRNNWQSDDDNLTIGNFSLTVLKRKAMWSGISQLYAVKSGENYVFSAYAKSSMDNDVVNLYLLPNGQSPQAKISISFKSITLNTDWQRIVIKFNVTSDGYILPRFERFNENGWLYIAGYQLEHGNVASDYSEAPADQEDKMTVEFNKINDTVNSHSQLIGKQNESLTATIQKVDNIQSTVSNVDGRLSRVTQTADGIVTTVSQLDNNILPGTKNFTGWQIEGAVLEDVTQSSYPFVFKKWISGNKVSPLIEYDVKKNQEYTFTAYIAREQAGNLYFYLYDLWNHHITSATPRETIIRDVNSSVIRFRITFIPNRDGKIRPRFAMLASDQGWFMVGGFMLSKGTADLPWSESKQDIKDNVTAINTIVAQTANSWAIKNLTSNGTVLSQLNLTDGNVKLEGKLIHLSGQSIIDNGIITNAMIKDLTADKITAGTIDANRINVINLDASNITSGRMSADLIRSGVLISQNGAMLTDLNTGQIEFYTDNPAIKRITAGYPNQFVKFATGNVEGKGAAGVTVIGSNRWGSESSNDGGFVGIRAWNGKDIDTLDLVGDSIHLASSAYTNADGWEIITLPNQLSIDARNINHRVTSKVKVGDIWLWKNTSTYVSMKDTINMIIDNLQLLHNNKTTEKGYSYTIPGKI

Physico‐chemical properties

protein length:	1275 AA
molecular weight:	142455,07710 Da
isoelectric point:	5,56507
aromaticity:	0,09020
hydropathy:	-0,40549

Domain architecture

XHB26124.1

1 1275 aa

STR 79–164 · ENZ 165–301 · STR 621–757 · RBD 1010–1196 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:3.55.50.40
STR

G3DSA:3.55.50.40 Coil G3DSA:2.60.120.260 IPR012892

IPR010572
ENZ

IPR010572 IPR008979

XHB26124.1

11275 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1353
STR

DC_1353 DC_0171

DC_0171
RBD

DC_0171

XHB26124.1

11275 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:3.55.50.40	STR	G3DSA:3.55.50.40	79	164	Merged direct domain	G3DSA:3.55.50.40	Central	Low	Positional only	63 proteins / 63 hits
IPR010572	ENZ	DC_0675	83	301	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits
Coil	Unmapped	-	464	484	Coils	Coil	-	-	-	-
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	621	757	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
IPR008979	STR	IPR008979	626	756	Merged direct domain	Galactose-binding-like domain superfamily	Central	Low	Positional only	24 proteins / 24 hits
IPR012892	RBD	DC_0453	1010	1196	InterPro cluster	Gp58-like	C-terminal	Low	Positional only	116 proteins / 119 hits

Proteins with similar domain architecture

Phage

Streptococcus phage phiGBSVK-C_GBSInt4 [NCBI] · taxon 3345062

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Streptococcus agalactiae [NCBI] · taxon 1311

cellular organisms Bacteria Bacillati Bacillota Bacilli Lactobacillales

Genbank protein accession

XHB26124.1 [NCBI]

Genbank nucleotide accession

PP758848 [NCBI]

CDS location

range 32174 -> 36001
strand +

CDS

TTGACAACTTTTTTAGATCATAAAGATAATGAGTTTGAAGCTCAAGCTGTTGTTAAAACAACTAATGCAGTTAACGGAGAAAGGTCTTTATCAGGAACAATTTATACTAACGAAGAGGTACTAAACAAGGTCGATAAAGGTTGGAAACTTGAGTTTGATGATGAGTATTACAAGATTATTTATGCTAAACCTACTGATACTGGTAACAAAATTCAAGTTGAATTTGATGCAGTTCATCAATTTTTTTATGATTTTGATAAATCATCACTACATAAGCAATTAAATGATGGTTCACATACTTTCCAAGCATATTTGAACTTTATTTTTAATGGCAGCGGGTATACTTACAGTTTAGAAGTAGTTGTCAAATCTTTCGAAAAGCAATCGTTTGGATATAAATCGCGACTTGATTTATTTAATGACATCATTAAGAGTGCAGGAGTTGAATTTTTTGTTCGTGGCAAGGTTGTTCGAATTCTACAAAAAACAGGAACAGATTTATCAACAATCGTACGTAAAAATTTCAATATGAATGAAATCATAATTGAAAAGAAAATCAATGATTTTATTACATATCAGAAGGGTTTTGGAGCGTGGACTGACCAAGAGGATCATTCCAAAGGAAGGCTCGAAGTAGAATATGAAAGTCCACTTGCAAAGGAATATGGACGAATTGAGGGTGAGCCTGTTGTTGATGAGCGGTACACTAACGCTGACAATTTAAAATCAGTACTAAAACAAAATGTAGATTCGTCTTACAATATCGCTGTAAAAATTGACATTGAAGATCTTACAAAAGCAGGTTATCAGTACACTCAACCTATTGCCGGTGATTATATTATGGCTATCAATGAGACACTAGGATTTAAGGAAAAAATCCGAATAGTATCGTTTGAAAGTGAGTATGATGTAACAGGTCAGCTGATTAACCATAAAGTCATTTGTAACGATATTGGTACAATCAAAAAACAAACTGTAGCTGTTAGCCAATTATCAAGTAAGATTAATAATAACCAAGAAATACTAGATAATGCAGTATTTAAAGCAAATCAAGCACTAGCATCAGCTGATGGTAAAAACACTAACTACTATGGTACGGAGATGCCAGTAGATGATCCAAAAGGCACGCTAAGAAAGGGTGATTTGCTTTTTTTAACTGTTGGCGATACTACCAGAATGTATTTCTGGAATGGTGCTGAATGGATTATCAATTCTTTTAGCGACGATATTGATTTTGTAAAGAAAGAAATTACTAATAAAATCATAGAGGTTAATGCAGCAATGAAACTTGCTGATGAACAGTTAACTGAAAAATATAATGCAATTGTTGCTAAAAATGTTAGCCAAGACGAATTAATTAATCAAGCAAAGAATTTGTCTGATTCTGCCAAAAAAGATGCTACAGAAGCATTGACAAACCTTATTAGTGAATCTAAAAAACTGACGGATAAAATGTCTGCGTTATCTAAAACAGAAGTTGAGCATTATTCAACAACTAATCTGCAACTGACACAACTTGATGGTACAGTCAAAGGATTACAAACTAGCTACGAGGCATTGTTAAAAAAAGATGGAGATATCACTCAAACACTCGCTAATTATAAGCAGACGATTGATCAAAATAGTACAAGTATTACTGCTAACAAAAAGACTGTTGATGGTACGCTTAGCAGTCTACAGACCCAAGTCACACAAACGGCTAATGAAATTACAACGAGATTATCTCAAACAAATATTGAAGCGTTGATTACAAGTAAGTCTGCTGTTATCGCTGATAATAAAGTCAAGGAAACTGCAGATAGTTTTAGCAGAGAAATAACTCGTGTTAATAATACTATTGATAATTTAAAGATAGGTACAGTTAATCTACTATCTGGTACTAAAAATTGGACTAAAAATTGGTTTAATCGTAATAACTGGCAATCTGATGACGATAACTTGACTATTGGTAATTTTAGCTTAACAGTGCTAAAGCGCAAAGCAATGTGGAGTGGTATATCACAATTGTATGCTGTAAAAAGCGGAGAGAATTACGTTTTTAGTGCATACGCTAAATCGAGCATGGATAATGACGTTGTGAATTTATATTTATTACCAAACGGTCAATCGCCGCAAGCAAAGATAAGTATTAGTTTCAAGTCAATCACTCTAAACACGGATTGGCAACGTATCGTTATTAAATTTAATGTAACTTCTGATGGCTATATCTTACCGCGTTTTGAACGTTTTAACGAAAACGGATGGTTGTATATTGCAGGCTATCAGCTAGAACATGGAAACGTTGCAAGTGACTATTCAGAGGCACCAGCCGATCAAGAAGACAAAATGACTGTTGAATTTAATAAAATCAACGATACAGTTAACAGCCATAGTCAATTGATTGGTAAACAGAACGAGAGTCTGACGGCTACAATACAAAAAGTTGATAATATACAATCAACAGTATCTAATGTTGATGGACGTTTGTCACGAGTTACACAAACTGCCGACGGTATAGTCACAACAGTTAGTCAGCTTGATAATAATATTTTACCTGGCACAAAAAATTTTACAGGATGGCAAATAGAAGGTGCAGTACTAGAAGATGTAACACAATCATCTTATCCATTTGTCTTTAAAAAATGGATAAGCGGCAACAAGGTATCGCCCTTAATCGAATATGATGTTAAAAAAAATCAAGAGTACACATTTACTGCATACATTGCTAGAGAACAAGCAGGTAATCTATATTTCTACTTGTACGATCTTTGGAATCATCATATCACAAGTGCAACCCCTCGCGAAACCATTATAAGAGACGTTAATTCTAGTGTAATACGATTTAGAATAACATTTATTCCAAATAGAGACGGTAAAATCAGACCACGGTTCGCAATGTTGGCCAGTGATCAAGGCTGGTTTATGGTTGGTGGTTTTATGTTATCTAAAGGTACCGCTGATCTACCCTGGTCTGAATCCAAGCAAGATATCAAAGATAATGTTACTGCGATTAATACAATAGTCGCACAAACAGCGAACAGTTGGGCTATTAAAAATTTGACTTCTAACGGTACTGTATTGAGTCAGCTTAATTTGACTGATGGTAACGTAAAACTGGAAGGTAAGTTAATACATTTGTCAGGTCAATCTATTATTGATAATGGCATTATTACTAATGCGATGATAAAAGATTTAACTGCAGATAAGATTACAGCAGGAACAATTGATGCTAATCGTATAAATGTCATTAATTTAGATGCTAGTAATATTACCAGTGGAAGAATGTCAGCGGACCTGATACGTAGCGGCGTTTTAATATCGCAAAACGGTGCAATGTTAACCGATCTTAATACAGGACAAATTGAATTTTACACAGATAATCCAGCTATCAAACGTATTACTGCAGGTTATCCTAACCAATTCGTTAAATTTGCAACAGGTAATGTTGAAGGAAAGGGCGCGGCTGGCGTAACGGTTATAGGTTCTAATCGATGGGGAAGTGAATCGTCAAACGACGGTGGCTTCGTTGGTATTCGCGCTTGGAATGGTAAAGACATCGATACTCTTGATTTAGTTGGCGATAGTATTCACTTAGCAAGCTCTGCGTACACTAACGCTGATGGTTGGGAAATCATTACTTTGCCAAATCAGCTATCAATAGATGCACGTAACATAAATCATCGTGTAACGTCTAAGGTAAAAGTAGGAGATATTTGGCTATGGAAAAATACATCAACTTATGTAAGCATGAAAGATACAATTAATATGATTATTGATAACTTGCAGCTACTACACAATAATAAAACCACTGAAAAAGGCTACAGTTATACTATTCCAGGAAAGATTTAG

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)