Protein

View in Explore
Genbank accession
QBQ75807.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,74
Protein sequence
MSTLNVGTVNSTTLNLGVGGIVFNDATSITTAPGAPALGDVTNVTITTPAPDDILVWNGSQWVNQAPEGGIGLGNVASRPSSNLTNTIRWNTETEVLETYLDHNNNGSVAAWHAVGGRQLIAKAMRKDQWGSMDIYWGQTAGRNSGRYYAYEIFMNFYEQNGNNAEYYLRLMTGNGTIDSGGNYYYSVESQHINDGFPRNNENGQSYIRIVNSDDSYDLRSNGESTYLCHFLLSNTPNSSTANYWSFSYNCAGHSGQGGGYLRGGGSWRHPGPAEGNAYPCNGIRIYNNQAQRPVTSGVNVCISVFGISGQEGREMLDNYGQP
Physico‐chemical
properties
protein length:323 AA
molecular weight: 35073,82090 Da
isoelectric point:5,07097
aromaticity:0,10836
hydropathy:-0,53344

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBQ75807.1
1 323
Domain Start End Length (AA) Confidence
N-terminal 1 14 14 0,9293
Central domain 15 213 200 0,0094
C-terminal 214 323 109 0,9984
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-14
Central
15-213
C-terminal
214-323

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIM8
[NCBI] 		756278 Uroviricota > Caudoviricetes > Pantevenvirales > Neptunevirus > Neptunevirus srim18
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBQ75807.1 [NCBI]
Genbank nucleotide accession
MK493325.1 [NCBI]
CDS location
range 27924 -> 28895
strand +
CDS
ATGTCAACTCTTAATGTAGGAACAGTAAATTCAACGACTCTCAATTTGGGAGTTGGTGGTATTGTGTTTAATGATGCTACTAGCATCACTACTGCTCCTGGAGCACCAGCATTGGGTGATGTTACTAACGTAACTATTACTACTCCAGCACCAGACGATATTTTAGTTTGGAATGGTAGTCAATGGGTGAACCAAGCACCTGAGGGAGGAATTGGTCTCGGTAATGTTGCTTCAAGACCATCTAGCAACCTGACTAATACAATTAGATGGAATACTGAGACTGAAGTATTAGAAACCTATCTTGACCATAATAATAATGGCAGCGTTGCTGCATGGCACGCTGTCGGTGGAAGACAGTTGATTGCTAAAGCAATGCGAAAAGATCAGTGGGGCAGCATGGATATTTACTGGGGTCAAACCGCTGGCAGAAACAGTGGTAGATATTATGCTTATGAAATTTTTATGAATTTCTACGAGCAAAATGGTAACAACGCAGAATATTATTTGCGTTTGATGACAGGTAATGGTACTATTGACAGTGGTGGTAACTACTATTATTCTGTTGAGTCACAGCATATTAACGACGGATTCCCAAGAAACAACGAAAATGGTCAGAGTTATATTAGAATTGTAAACAGTGACGATAGTTATGACCTTCGTAGTAACGGTGAGTCTACCTATCTGTGTCACTTCTTATTGTCGAATACTCCTAACTCCAGTACAGCAAACTATTGGTCGTTTAGTTACAACTGTGCTGGTCACTCTGGACAGGGCGGCGGATACTTAAGGGGTGGCGGTTCTTGGAGACATCCTGGACCTGCTGAAGGTAATGCATACCCTTGCAATGGTATCCGAATTTATAACAACCAGGCCCAGAGACCAGTTACGTCAGGCGTCAACGTCTGTATATCCGTATTTGGTATCTCAGGTCAAGAAGGTAGAGAAATGCTCGACAATTATGGACAACCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4447662a6708c4f8115ee5997d2a10d93b54181afd32b97eb3de37d4ae527e5a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6946
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diversity in Cyanophage Genomes from Southern New England Coastal Waters Marston,M.F. 2013-04-03 — GenBank