Protein

View in Explore
Genbank accession
YP_010113910.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,88
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MEQDNVYTRITVTKASDKDNSINAGQYPSFVVNLSNSITGVSSVDLGDAITRSENAANAAKTSQTEAKKSENAAKASADASATSLANIKDSEAKAKASADAAKTSETNAKASETKAKTSETNAKASETKAATSAQAAADSAGSVSDEAAQAAASASAAKTSENAAKASQTAAATSEVNSANSAGAAKDSASKAKVSETNAKTSETNAKTSETNAKTSETNAAASAKAAADVAESISDEVAQTAANAIAAKKSEDAAKASQTAAAASEVNSAASAEAAKGSETNAKASEDAAKTSETNAKTSETNAKTSETEADRYQALATSMANASRSSAGNSATSANNSRIYERSAETYASTAKEAQEEAAKSQEAAKISETNSAESAAASASSAAEAKRSEDAAKEAAMGLPTIENTDKRYPKVRIHIPNGTDILEFFKTAKTGFYFSTKDVVNGFGDDTNYIWTNGRDDITSSSAETTYGVLTAYTYNGYIFMKVLNKGFWNGTRDVVVTASGGTTFEDLVVQKSSANRLKMVTGATQRENRISFHDGLSTLDGNMSAFIGFPGGSTRFFISNEKNSTAIEISDQAYFQKGNNRSMITTELSLGGTSFFPRGVVAWNSTPPAYNAGSGMYKMGQGADDATIINFSAQDDKMYAGALQFRFIRSHLGSLKYRIAGFNSTDFPMGWLDIVTQIQGKQYYRDDNAFFGAGTQTDAIKFGMPNTGVMIQAKFAENRKGQLFLGEDGSIKTRWVAEVGKGGDIAWVDVLDSNNTTRDPNGFIKIASPVVKVFKDSCTTNKESEGVTFEKLGVGHYVIHGTLGFNSDGGWGIRGGVVVPKDENDQPLLWVNTKILPNGDIEIKTYHRQHDNVPEQFQNTRIKEIEGDTITYYTDGEAADIPDNTWLDVRVQMPEDSIYSRKLLATRLENEKIEEERLAALEAERIEALEGIEQTEKQIQEDGWTVPPRVEEPTE
Physico‐chemical
properties
protein length:961 AA
molecular weight: 102029,38380 Da
isoelectric point:5,01425
aromaticity:0,06868
hydropathy:-0,56379

Domains

Domains [InterPro]
DC_0608
ATT
2–172
DC_0608 DC_0709
IPR029717
Unmapped
55–397
IPR029717 IPR058008 Coil
Coil
Unmapped
347–374
Coil
YP_010113910.1
1 961
Architecture
ATT
STR
ATT 2-172 | STR 188-931 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010113910.1
1 961
Domain Start End Length (AA) Confidence
N-terminal 1 409 409 0,7898
Central domain 410 616 208 0,5409
C-terminal 617 961 344 0,7647
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-409
Central
410-616
C-terminal
617-961

Taxonomy

  Name Taxonomy ID Lineage
Phage Providencia phage PSTCR5
[NCBI] 		2783547 Uroviricota > Caudoviricetes > Demerecviridae > Priunavirus PSTCR5 >
Host Providencia stuartii
[NCBI] 		588 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010113910.1 [NCBI]
Genbank nucleotide accession
NC_055910.1 [NCBI]
CDS location
range 20163 -> 23048
strand -
CDS
ATGGAACAGGATAACGTTTACACAAGGATTACGGTTACAAAAGCGTCAGATAAAGACAACAGCATAAATGCAGGACAATACCCAAGTTTTGTTGTAAACCTATCTAACTCTATTACTGGAGTTTCCTCAGTAGACTTGGGGGACGCAATCACCCGTTCCGAAAATGCGGCTAACGCGGCTAAAACTTCTCAAACAGAAGCTAAAAAGTCAGAAAATGCTGCTAAGGCGAGTGCAGATGCTTCTGCTACTAGTTTGGCTAATATTAAGGATTCAGAAGCTAAGGCTAAAGCGAGTGCAGACGCAGCTAAAACATCGGAAACAAACGCTAAGGCATCCGAGACTAAAGCTAAAACATCTGAAACAAACGCTAAGGCGTCCGAAACTAAGGCTGCTACATCTGCTCAAGCTGCGGCGGATAGTGCTGGAAGTGTTTCTGACGAGGCTGCTCAGGCAGCTGCTAGTGCATCAGCCGCTAAAACGTCAGAAAATGCTGCCAAGGCTTCCCAGACTGCTGCTGCAACCTCTGAAGTAAATTCTGCTAATAGTGCAGGAGCGGCTAAGGATTCGGCATCTAAGGCAAAAGTCTCCGAAACTAATGCAAAAACATCTGAGACTAATGCTAAGACATCTGAGACTAACGCTAAGACATCTGAGACCAACGCCGCTGCATCAGCTAAGGCAGCTGCTGATGTTGCTGAAAGCATATCAGATGAAGTTGCCCAAACTGCTGCCAATGCTATTGCCGCTAAGAAGTCAGAGGACGCTGCTAAGGCTTCTCAAACTGCTGCGGCAGCTTCTGAGGTAAATTCTGCCGCCAGTGCAGAAGCAGCTAAAGGTTCTGAGACTAATGCAAAAGCCTCCGAAGACGCAGCTAAAACGTCAGAGACAAACGCTAAGACATCAGAGACAAACGCTAAGACATCAGAGACAGAAGCAGATAGATACCAAGCACTCGCAACATCAATGGCAAATGCTTCTAGGTCATCTGCGGGAAACTCAGCTACCTCAGCAAATAATTCTAGGATTTATGAAAGGTCCGCTGAAACTTATGCAAGCACGGCTAAGGAAGCACAAGAGGAGGCTGCGAAATCTCAGGAAGCTGCTAAAATATCTGAGACCAACTCAGCTGAATCAGCCGCTGCGTCAGCCAGTTCTGCAGCAGAGGCTAAAAGATCTGAGGATGCTGCTAAGGAAGCGGCAATGGGGCTTCCAACCATAGAGAATACTGATAAACGTTATCCAAAAGTACGTATACATATCCCCAATGGTACTGATATACTAGAGTTTTTTAAAACTGCCAAGACAGGTTTCTACTTCTCTACTAAGGACGTGGTTAATGGGTTCGGGGATGATACAAACTACATATGGACTAATGGTAGAGATGATATAACCTCCTCTAGCGCTGAAACTACTTATGGGGTGCTAACTGCGTATACTTATAATGGGTATATCTTTATGAAAGTACTCAACAAAGGGTTTTGGAACGGTACGCGTGATGTAGTTGTTACCGCCTCTGGAGGCACTACCTTTGAAGATCTAGTAGTGCAGAAATCATCTGCCAATAGGCTTAAGATGGTAACAGGAGCAACTCAACGTGAAAACAGAATATCCTTCCATGACGGTCTTAGTACCCTAGACGGCAATATGTCTGCTTTTATTGGGTTCCCTGGTGGATCTACTAGATTCTTCATCAGTAATGAGAAGAACAGCACAGCTATAGAAATCTCTGACCAAGCATACTTTCAGAAAGGTAACAATAGATCTATGATTACTACTGAGTTGTCCTTAGGGGGAACTAGTTTCTTCCCTAGAGGCGTAGTAGCATGGAACTCTACCCCTCCTGCGTATAACGCCGGGTCTGGTATGTACAAGATGGGGCAAGGAGCTGATGATGCTACTATTATCAACTTTAGTGCTCAAGATGATAAAATGTACGCTGGGGCATTGCAATTCAGATTTATACGCTCTCATCTTGGGTCTTTAAAGTATAGGATTGCTGGGTTTAACTCTACTGATTTCCCTATGGGGTGGTTAGATATAGTTACCCAAATTCAGGGCAAACAGTACTATAGGGACGACAACGCATTTTTCGGTGCCGGAACACAAACTGACGCTATCAAGTTTGGGATGCCTAATACTGGTGTTATGATTCAGGCTAAATTTGCTGAGAATAGAAAGGGGCAACTATTCTTAGGAGAGGATGGTAGTATAAAAACTCGTTGGGTAGCCGAAGTAGGGAAAGGAGGGGATATTGCATGGGTTGACGTGCTAGACTCTAATAATACTACTAGGGACCCTAATGGGTTTATTAAGATAGCTTCTCCCGTTGTAAAAGTATTTAAAGATAGCTGTACGACTAATAAAGAGTCTGAGGGTGTGACTTTTGAAAAACTTGGAGTAGGTCACTACGTAATTCACGGCACTCTAGGATTCAATTCTGATGGTGGTTGGGGTATTCGAGGAGGTGTGGTAGTTCCTAAAGACGAGAATGACCAGCCGTTACTATGGGTAAATACAAAGATCCTCCCGAATGGTGATATAGAAATTAAAACATATCATAGACAACATGATAATGTTCCAGAACAATTTCAAAACACTCGTATTAAGGAGATAGAAGGGGATACTATTACCTACTATACAGATGGTGAGGCAGCAGATATACCAGATAATACGTGGTTGGATGTTCGTGTGCAGATGCCAGAGGACTCTATATACAGTAGAAAACTTTTGGCTACACGGCTAGAAAATGAGAAGATTGAGGAAGAGAGGTTAGCAGCCCTAGAAGCCGAACGTATTGAGGCTTTAGAGGGTATCGAGCAGACAGAGAAACAAATCCAAGAAGACGGGTGGACTGTACCACCTAGAGTTGAAGAACCAACCGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6aaaee8bda62f04ab73207e011ca9a7ac3ddabfc2fa5f4db6068e971495ac469
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5972
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel bacteriophages targeting Providencia spp. as potential agents for phage therapy Rakov,C., Alkalay-Oren,S., Coppenhagen-Glazer,S. and Hazan,R. 2021-04-02 — GenBank