Phage RBP Database

Genbank accession

YP_004421506.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,76

TF

Evidence RBPdetect2

Probability 0,92

Protein sequence

MANLIKLRRSAVQGNIPTTAQIALGELALNTYDGKLYAKKSVGGVESIVELSGGGGGGGTTGTPLRYLHVDGTTTQNLSTTEVTLDFDTTITSSGAGDFTVGSGGEITVLNNGTYYVEYSATGDQTSGNNRVIVFAHLEVNGTVVTGSQASVYSRNIADGAFSAVGSSVVNLNANDVIRVRASSDINSIIATIDNSISGLSIFSLSGSGPQGEQGIQGPQGIQGEPGIQGEQGIQGPQGIQGEPGIQGEQGIQGEQGIQGETGPAGPTGPAGPSDIPQNAKTTSYTLISSDNGKHISITTGGVTVPSGVFSSGNVISVYNNSSTAQTVTQGTGVTLRTGGTATTGNVTLSQRGLCTILCVSSNEFVVTGHIS

Physico‐chemical properties

protein length:	372 AA
molecular weight:	37447,62400 Da
isoelectric point:	4,65781
aromaticity:	0,04301
hydropathy:	-0,11371

Domain architecture

YP_004421506.1

1 372 aa

RBD 71–205 · STR 210–300 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR008983
RBD

IPR008983 IPR050149

IPR008160
STR

IPR008160

G3DSA:1.20.5.320
STR

G3DSA:1.20.5.320

YP_004421506.1

1372 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1031
STR

DC_1031

YP_004421506.1

1372 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR008983	RBD	IPR008983	71	205	Merged direct domain	Tumour necrosis factor-like domain superfamily	C-terminal	Low	Positional only	19 proteins / 19 hits
IPR050149	Unmapped	-	209	273	InterPro	Collagen superfamily	-	-	-	-
IPR008160	STR	DC_0536	210	266	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	245	300	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits

Proteins with similar domain architecture

Phage

Synechococcus phage S-CBS2 [NCBI] · taxon 753084

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Synechococcus sp. CB0204 [NCBI] · taxon 232353

Bacteria Cyanobacteria Oscillatoriophycideae Chroococcales Synechococcus

Genbank protein accession

YP_004421506.1 [NCBI]

Genbank nucleotide accession

NC_015463.1 [NCBI]

CDS location

range 38798 -> 39916
strand +

CDS

ATGGCTAACTTGATCAAACTGCGTCGCAGTGCCGTCCAAGGCAATATCCCTACGACGGCCCAGATCGCACTAGGCGAGCTTGCTTTGAACACATACGACGGCAAGTTGTATGCAAAGAAGTCGGTTGGCGGTGTTGAGTCAATCGTTGAGCTGAGCGGTGGCGGAGGAGGCGGCGGGACCACCGGTACGCCTCTGCGCTATTTGCACGTTGACGGCACAACTACTCAGAACCTGTCAACAACAGAAGTCACGCTCGACTTTGACACCACCATCACCTCCTCCGGCGCGGGTGACTTCACCGTAGGGAGCGGCGGCGAGATCACCGTACTCAACAACGGTACTTACTACGTTGAGTACAGCGCCACAGGCGACCAGACATCAGGCAACAACCGTGTGATAGTGTTCGCGCACCTTGAGGTGAACGGAACCGTTGTCACGGGCTCGCAGGCCAGTGTTTACTCCAGGAACATAGCTGATGGTGCGTTTAGCGCCGTTGGCTCATCCGTCGTCAACTTAAACGCAAACGATGTAATTAGGGTTAGGGCAAGCAGTGATATAAACTCGATTATTGCCACCATCGACAACAGCATTTCTGGCTTGTCGATATTCAGCCTTAGCGGCTCTGGGCCTCAGGGAGAGCAGGGAATTCAGGGCCCGCAAGGAATTCAAGGCGAGCCAGGAATTCAAGGTGAGCAAGGAATTCAAGGCCCGCAAGGAATTCAAGGCGAGCCAGGAATTCAAGGTGAGCAAGGAATTCAAGGCGAGCAAGGAATTCAAGGCGAAACCGGTCCGGCCGGGCCAACCGGGCCAGCGGGTCCTAGTGATATTCCCCAGAATGCAAAGACCACCTCTTACACGCTTATCAGTAGTGACAATGGCAAGCACATCAGCATTACCACTGGAGGCGTGACTGTACCCAGCGGGGTATTCAGCTCTGGCAACGTTATCTCTGTCTATAACAACAGCAGCACGGCGCAGACCGTCACACAGGGCACTGGGGTGACCTTGCGCACAGGGGGCACCGCCACCACAGGGAACGTGACGCTAAGCCAGAGGGGGTTATGCACGATCCTCTGTGTTTCGTCTAACGAGTTCGTCGTTACGGGGCATATTTCCTGA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)