Protein

View in Explore
Genbank accession
QIG76262.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,83
Protein sequence
MARKTIDELPVASPEAVATGTLLIADENGLEYRATTAILGGVHLFFTDEDDQTPFVFGRLTSPGRTVENIQITLTATPVGGGTAVVRTTLTDALGNFTYDFTSSLARGVSYTIEGKAASYLAETTTKTIAALSAPIAALTATSTAKVGDDITVDPPSFSGSPTVIRYRYLRGSSYVIPGADSSVYTLQPDDDADTITPQVQATNAGGDSPWYPATAIGPVSNKESVLLTNPVISGSTSLGGRVVVSEPGSASNYATVKSDEWQLDGARIPTTKAPLQRYFAGAANASAPTTYPDGSNHHGVNLSSTMYTGSNTYSYSVGVSATENDYLVSAMGAAGGNEGPQVYDLFIKHINTNAALRFQMFAAKYRGGVLQEEVQMPKIGVAAGTELNELTATPNAVNRWTLTHDFGEWLAGDVLVFRQRARNTSGSSTNNYQWDARNGASYAMLPIGPVNDLQKTLSTFTTRADMAGKKVRLARTFSNRNNDVIGYSNEITLEAAATQTAVPANVTLPAIVTSSDRSNNTWQADFGAWSNQPSGFAIQWLDNGADISGATQMSYKIPSSLEGHEVSFRVTATNDIGSTSAVSLARTVLPAAVFYKTDTGNDSNDGSTPELAKQTLNGSDSIPSGSTAIMQGDFGTRLRLGNSRNYEGVDTSLTSIGSTSISYAIDQYTDDGSIGRSNIKLSKFRIKSGDRAINARQGSNWVIEDVILENVGFSPIVSAENASGMMFYKNSGLTLRRVQFLLVNSDALFSDTNDRVLVEDCTFLPVFTSEGDNIQTRADRLVSGSPGPHQKGFVLRGSYLDMHSRKTSSGKGCLVTNMQDYAYIHDNDFDGNNFVHGTDEGDNHVFTRNICRYARKNTYSFGYGIGGYDDEPASHNHHVYDNYWYDINRAHSYTGIPVTGYTGTKSGRIDIMAHDETIVKCAVGARVDRPTSGKFRGFVFHNVSKPLDRTITTIPSGGEVNAFIWSDHYTYNGSVLVPPGVTTRATITGTRTSGSVLTGGDSVFDTAAVLAAFPSAVITRSYQWRRHKPAVKWTGWSEGLGWMCEWIDGATSQSYTLTDDDQGCLVSRVDRIHLTFTEGGVSKTVTALAYDGSFKDSTPITRTGDLAVALPTLATSSNISASATEGTLVLDLAALITGETRSLLHPSRAFDPYTGTAITVDSNGDIVRGAGTLTVGSTFSVKIRQKRGIDIVDSTINFTVIT
Physico‐chemical
properties
protein length:1203 AA
molecular weight: 128712,09690 Da
isoelectric point:5,43912
aromaticity:0,08645
hydropathy:-0,24705

Domains

View on InterPro
Domain architecture
QIG76262.1
1 1203 aa
RBD 504–584 · STR 585–943 · RBD 981–1087 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
QIG76262.1
1 1203 aa
Domain Start End Length (AA) Confidence
N-terminal 1 234 234 0,9306
Central domain 235 465 232 0,6244
C-terminal 466 1203 737 0,1587
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Rhizobium phage RHph_I34 [NCBI] · taxon 2509592
Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes
Host No host information

Coding sequence (CDS)

Genbank protein accession
QIG76262.1 [NCBI]
Genbank nucleotide accession
MN988553 [NCBI]
CDS location
range 59547 -> 63158
strand -
CDS
ATGGCCCGCAAAACTATCGATGAACTTCCGGTTGCTTCGCCTGAAGCAGTTGCAACTGGAACTCTTCTAATCGCTGACGAGAACGGACTTGAGTATCGCGCAACGACTGCTATTCTCGGTGGCGTACATCTTTTCTTCACTGACGAAGATGATCAGACTCCTTTCGTATTCGGTCGTCTCACGAGTCCTGGTCGTACTGTTGAAAACATTCAGATCACGCTTACGGCTACTCCAGTAGGCGGCGGTACTGCAGTAGTGAGGACGACTCTCACTGACGCTCTTGGAAACTTCACTTACGACTTCACATCTTCGCTTGCTCGAGGAGTGTCTTATACAATCGAAGGTAAAGCTGCATCGTATCTCGCTGAAACGACCACGAAGACGATTGCTGCTCTGTCTGCTCCGATTGCAGCTCTTACTGCTACTTCTACTGCGAAGGTAGGTGACGACATTACTGTCGATCCGCCTTCTTTCAGCGGAAGTCCGACTGTTATTCGTTATCGGTATCTTCGTGGTTCGTCTTACGTCATTCCTGGTGCAGATAGTTCTGTCTACACGCTTCAGCCTGATGACGACGCTGACACTATCACTCCTCAAGTCCAGGCTACTAACGCTGGTGGTGATAGTCCTTGGTATCCTGCGACTGCTATCGGTCCAGTCTCGAACAAAGAATCAGTTCTTCTCACAAATCCAGTTATCTCTGGATCGACTTCTCTAGGCGGTCGAGTAGTTGTTTCCGAGCCTGGTTCTGCTTCGAACTATGCTACAGTTAAGTCTGACGAATGGCAGCTCGACGGTGCGAGAATTCCGACGACGAAGGCTCCACTTCAGCGTTATTTCGCAGGCGCAGCTAACGCTTCTGCTCCTACTACCTATCCTGACGGTAGCAATCATCACGGCGTAAACCTTAGTTCGACAATGTACACTGGCTCGAACACGTACAGTTATTCAGTCGGAGTCAGTGCTACCGAAAACGACTATCTAGTTTCTGCTATGGGTGCAGCTGGCGGAAACGAAGGTCCTCAGGTATACGATCTGTTCATAAAACATATCAACACGAATGCCGCGCTTCGTTTCCAGATGTTTGCTGCCAAATATCGAGGCGGTGTGCTGCAAGAAGAAGTGCAGATGCCAAAGATCGGAGTAGCTGCAGGAACCGAACTTAACGAACTTACTGCCACCCCGAATGCTGTCAACCGTTGGACTCTCACTCACGACTTCGGAGAGTGGCTTGCAGGCGACGTCCTTGTATTCCGTCAACGAGCCAGAAACACGTCTGGATCTTCGACGAACAACTACCAGTGGGATGCTCGAAACGGCGCTTCTTACGCGATGCTTCCGATCGGTCCTGTAAACGATCTTCAGAAGACTCTCTCAACATTCACCACTCGCGCAGACATGGCTGGCAAGAAGGTTCGTCTCGCTCGTACTTTCTCGAACAGAAACAACGACGTTATCGGCTATTCGAACGAAATCACTCTCGAAGCAGCAGCTACGCAGACTGCTGTTCCTGCGAACGTTACTCTTCCTGCAATCGTAACTTCTTCTGATCGTTCGAATAACACATGGCAAGCTGACTTCGGTGCCTGGAGCAATCAACCCAGCGGTTTCGCTATCCAGTGGCTTGATAACGGTGCTGACATCTCTGGCGCTACGCAGATGAGCTATAAAATTCCGTCTTCTCTCGAAGGTCACGAAGTATCCTTCAGAGTCACGGCTACCAACGACATAGGATCTACTTCAGCCGTGAGTCTCGCAAGAACAGTTCTTCCTGCAGCAGTGTTCTATAAAACCGATACAGGTAACGACTCGAACGACGGCTCGACTCCGGAACTCGCTAAGCAGACTCTTAATGGATCTGACTCGATTCCGTCAGGTTCGACTGCGATCATGCAAGGCGATTTCGGAACTCGTCTTCGACTCGGTAACAGCAGGAATTACGAAGGTGTAGATACGTCTCTGACCTCTATCGGTAGCACTTCTATCTCTTACGCTATCGACCAATACACGGACGACGGTTCTATCGGTCGCTCGAACATCAAACTGTCGAAATTCCGTATCAAGTCTGGCGATCGTGCCATCAACGCACGTCAAGGTTCGAACTGGGTTATCGAAGACGTGATCTTGGAGAACGTCGGGTTCTCTCCTATCGTTTCTGCAGAAAATGCTTCTGGCATGATGTTCTACAAGAACAGCGGTCTTACTCTTCGTCGAGTTCAGTTCCTGCTCGTCAACTCGGATGCCTTGTTCTCTGACACGAATGATAGAGTTCTAGTCGAAGATTGCACTTTCCTTCCTGTGTTCACTTCGGAAGGTGACAATATTCAGACTCGAGCCGATCGTCTCGTAAGTGGAAGTCCTGGCCCTCACCAGAAGGGTTTCGTCCTTCGTGGAAGCTATCTCGATATGCATTCGAGAAAGACTTCGTCTGGTAAAGGCTGTCTCGTTACCAACATGCAAGACTACGCCTACATCCACGATAACGATTTCGACGGTAACAACTTCGTTCACGGAACTGACGAAGGTGATAACCACGTTTTCACGAGAAATATCTGCAGATATGCTCGAAAGAATACGTATTCGTTCGGCTATGGTATCGGTGGCTACGATGACGAGCCTGCTTCTCATAACCACCATGTCTATGACAACTACTGGTACGATATCAATCGTGCTCACTCGTACACTGGTATTCCTGTCACAGGATATACTGGCACGAAATCCGGTCGTATCGACATCATGGCCCATGACGAAACTATCGTGAAGTGTGCAGTAGGCGCACGTGTTGATAGACCGACTTCTGGTAAATTCCGAGGTTTCGTATTCCACAACGTATCGAAGCCTCTTGACAGAACCATCACTACTATCCCTTCTGGTGGTGAAGTCAACGCATTCATCTGGAGTGATCACTACACTTACAACGGCTCAGTTCTTGTTCCTCCTGGCGTAACGACTCGTGCAACGATCACTGGAACTCGTACATCTGGTTCAGTTCTCACTGGTGGTGACTCCGTTTTCGATACGGCTGCTGTTCTCGCTGCATTCCCGAGTGCAGTGATTACTCGTTCATATCAGTGGCGTCGTCACAAGCCTGCTGTGAAGTGGACTGGGTGGTCTGAAGGTCTCGGCTGGATGTGCGAATGGATCGATGGTGCTACGTCTCAGAGCTACACTCTCACCGACGACGATCAAGGTTGCCTGGTAAGTCGTGTAGATCGTATTCATCTCACGTTCACCGAAGGTGGCGTATCGAAGACTGTTACGGCTCTCGCTTACGATGGTTCGTTCAAGGACTCAACTCCGATTACGAGAACTGGAGATCTCGCTGTTGCACTTCCGACTCTTGCAACTTCGTCGAACATCTCTGCTTCTGCAACTGAAGGCACTCTCGTCCTTGATCTTGCAGCACTGATCACCGGTGAAACGAGGAGTCTTCTGCATCCGAGCAGAGCTTTCGATCCGTACACTGGAACTGCCATTACGGTAGACTCCAATGGTGACATCGTAAGAGGTGCAGGTACTCTGACTGTCGGAAGCACTTTCAGTGTGAAGATCCGTCAGAAGAGAGGCATAGATATCGTAGACTCGACAATCAACTTCACTGTTATTACGTGA

Genome Context

Tertiary structure

QIG76262.1
ColabFold structure
Source ColabFold
pLDDT 27.2
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank