Protein

View in Explore
Genbank accession
QIG76262.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MARKTIDELPVASPEAVATGTLLIADENGLEYRATTAILGGVHLFFTDEDDQTPFVFGRLTSPGRTVENIQITLTATPVGGGTAVVRTTLTDALGNFTYDFTSSLARGVSYTIEGKAASYLAETTTKTIAALSAPIAALTATSTAKVGDDITVDPPSFSGSPTVIRYRYLRGSSYVIPGADSSVYTLQPDDDADTITPQVQATNAGGDSPWYPATAIGPVSNKESVLLTNPVISGSTSLGGRVVVSEPGSASNYATVKSDEWQLDGARIPTTKAPLQRYFAGAANASAPTTYPDGSNHHGVNLSSTMYTGSNTYSYSVGVSATENDYLVSAMGAAGGNEGPQVYDLFIKHINTNAALRFQMFAAKYRGGVLQEEVQMPKIGVAAGTELNELTATPNAVNRWTLTHDFGEWLAGDVLVFRQRARNTSGSSTNNYQWDARNGASYAMLPIGPVNDLQKTLSTFTTRADMAGKKVRLARTFSNRNNDVIGYSNEITLEAAATQTAVPANVTLPAIVTSSDRSNNTWQADFGAWSNQPSGFAIQWLDNGADISGATQMSYKIPSSLEGHEVSFRVTATNDIGSTSAVSLARTVLPAAVFYKTDTGNDSNDGSTPELAKQTLNGSDSIPSGSTAIMQGDFGTRLRLGNSRNYEGVDTSLTSIGSTSISYAIDQYTDDGSIGRSNIKLSKFRIKSGDRAINARQGSNWVIEDVILENVGFSPIVSAENASGMMFYKNSGLTLRRVQFLLVNSDALFSDTNDRVLVEDCTFLPVFTSEGDNIQTRADRLVSGSPGPHQKGFVLRGSYLDMHSRKTSSGKGCLVTNMQDYAYIHDNDFDGNNFVHGTDEGDNHVFTRNICRYARKNTYSFGYGIGGYDDEPASHNHHVYDNYWYDINRAHSYTGIPVTGYTGTKSGRIDIMAHDETIVKCAVGARVDRPTSGKFRGFVFHNVSKPLDRTITTIPSGGEVNAFIWSDHYTYNGSVLVPPGVTTRATITGTRTSGSVLTGGDSVFDTAAVLAAFPSAVITRSYQWRRHKPAVKWTGWSEGLGWMCEWIDGATSQSYTLTDDDQGCLVSRVDRIHLTFTEGGVSKTVTALAYDGSFKDSTPITRTGDLAVALPTLATSSNISASATEGTLVLDLAALITGETRSLLHPSRAFDPYTGTAITVDSNGDIVRGAGTLTVGSTFSVKIRQKRGIDIVDSTINFTVIT
Physico‐chemical
properties
protein length:1203 AA
molecular weight: 128712,09690 Da
isoelectric point:5,43912
aromaticity:0,08645
hydropathy:-0,24705

Domains

Domains [InterPro]
DC_0400
STR
1–220
DC_0400 G3DSA:2.60.40.2700 IPR011050 DC_0572
DC_0400
STR
214–600
DC_0400 G3DSA:2.60.40.2700
DC_2223
STR
589–685
DC_2223
QIG76262.1
1 1203
Architecture
STR
RBD
STR 1-943 | RBD 947-1203
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG76262.1
1 1203
Domain Start End Length (AA) Confidence
N-terminal 1 234 234 0,9306
Central domain 235 465 232 0,6244
C-terminal 466 1203 737 0,1587
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-234
Central
235-465
C-terminal
466-1203

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_I34
[NCBI] 		2509592 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG76262.1 [NCBI]
Genbank nucleotide accession
MN988553 [NCBI]
CDS location
range 59547 -> 63158
strand -
CDS
ATGGCCCGCAAAACTATCGATGAACTTCCGGTTGCTTCGCCTGAAGCAGTTGCAACTGGAACTCTTCTAATCGCTGACGAGAACGGACTTGAGTATCGCGCAACGACTGCTATTCTCGGTGGCGTACATCTTTTCTTCACTGACGAAGATGATCAGACTCCTTTCGTATTCGGTCGTCTCACGAGTCCTGGTCGTACTGTTGAAAACATTCAGATCACGCTTACGGCTACTCCAGTAGGCGGCGGTACTGCAGTAGTGAGGACGACTCTCACTGACGCTCTTGGAAACTTCACTTACGACTTCACATCTTCGCTTGCTCGAGGAGTGTCTTATACAATCGAAGGTAAAGCTGCATCGTATCTCGCTGAAACGACCACGAAGACGATTGCTGCTCTGTCTGCTCCGATTGCAGCTCTTACTGCTACTTCTACTGCGAAGGTAGGTGACGACATTACTGTCGATCCGCCTTCTTTCAGCGGAAGTCCGACTGTTATTCGTTATCGGTATCTTCGTGGTTCGTCTTACGTCATTCCTGGTGCAGATAGTTCTGTCTACACGCTTCAGCCTGATGACGACGCTGACACTATCACTCCTCAAGTCCAGGCTACTAACGCTGGTGGTGATAGTCCTTGGTATCCTGCGACTGCTATCGGTCCAGTCTCGAACAAAGAATCAGTTCTTCTCACAAATCCAGTTATCTCTGGATCGACTTCTCTAGGCGGTCGAGTAGTTGTTTCCGAGCCTGGTTCTGCTTCGAACTATGCTACAGTTAAGTCTGACGAATGGCAGCTCGACGGTGCGAGAATTCCGACGACGAAGGCTCCACTTCAGCGTTATTTCGCAGGCGCAGCTAACGCTTCTGCTCCTACTACCTATCCTGACGGTAGCAATCATCACGGCGTAAACCTTAGTTCGACAATGTACACTGGCTCGAACACGTACAGTTATTCAGTCGGAGTCAGTGCTACCGAAAACGACTATCTAGTTTCTGCTATGGGTGCAGCTGGCGGAAACGAAGGTCCTCAGGTATACGATCTGTTCATAAAACATATCAACACGAATGCCGCGCTTCGTTTCCAGATGTTTGCTGCCAAATATCGAGGCGGTGTGCTGCAAGAAGAAGTGCAGATGCCAAAGATCGGAGTAGCTGCAGGAACCGAACTTAACGAACTTACTGCCACCCCGAATGCTGTCAACCGTTGGACTCTCACTCACGACTTCGGAGAGTGGCTTGCAGGCGACGTCCTTGTATTCCGTCAACGAGCCAGAAACACGTCTGGATCTTCGACGAACAACTACCAGTGGGATGCTCGAAACGGCGCTTCTTACGCGATGCTTCCGATCGGTCCTGTAAACGATCTTCAGAAGACTCTCTCAACATTCACCACTCGCGCAGACATGGCTGGCAAGAAGGTTCGTCTCGCTCGTACTTTCTCGAACAGAAACAACGACGTTATCGGCTATTCGAACGAAATCACTCTCGAAGCAGCAGCTACGCAGACTGCTGTTCCTGCGAACGTTACTCTTCCTGCAATCGTAACTTCTTCTGATCGTTCGAATAACACATGGCAAGCTGACTTCGGTGCCTGGAGCAATCAACCCAGCGGTTTCGCTATCCAGTGGCTTGATAACGGTGCTGACATCTCTGGCGCTACGCAGATGAGCTATAAAATTCCGTCTTCTCTCGAAGGTCACGAAGTATCCTTCAGAGTCACGGCTACCAACGACATAGGATCTACTTCAGCCGTGAGTCTCGCAAGAACAGTTCTTCCTGCAGCAGTGTTCTATAAAACCGATACAGGTAACGACTCGAACGACGGCTCGACTCCGGAACTCGCTAAGCAGACTCTTAATGGATCTGACTCGATTCCGTCAGGTTCGACTGCGATCATGCAAGGCGATTTCGGAACTCGTCTTCGACTCGGTAACAGCAGGAATTACGAAGGTGTAGATACGTCTCTGACCTCTATCGGTAGCACTTCTATCTCTTACGCTATCGACCAATACACGGACGACGGTTCTATCGGTCGCTCGAACATCAAACTGTCGAAATTCCGTATCAAGTCTGGCGATCGTGCCATCAACGCACGTCAAGGTTCGAACTGGGTTATCGAAGACGTGATCTTGGAGAACGTCGGGTTCTCTCCTATCGTTTCTGCAGAAAATGCTTCTGGCATGATGTTCTACAAGAACAGCGGTCTTACTCTTCGTCGAGTTCAGTTCCTGCTCGTCAACTCGGATGCCTTGTTCTCTGACACGAATGATAGAGTTCTAGTCGAAGATTGCACTTTCCTTCCTGTGTTCACTTCGGAAGGTGACAATATTCAGACTCGAGCCGATCGTCTCGTAAGTGGAAGTCCTGGCCCTCACCAGAAGGGTTTCGTCCTTCGTGGAAGCTATCTCGATATGCATTCGAGAAAGACTTCGTCTGGTAAAGGCTGTCTCGTTACCAACATGCAAGACTACGCCTACATCCACGATAACGATTTCGACGGTAACAACTTCGTTCACGGAACTGACGAAGGTGATAACCACGTTTTCACGAGAAATATCTGCAGATATGCTCGAAAGAATACGTATTCGTTCGGCTATGGTATCGGTGGCTACGATGACGAGCCTGCTTCTCATAACCACCATGTCTATGACAACTACTGGTACGATATCAATCGTGCTCACTCGTACACTGGTATTCCTGTCACAGGATATACTGGCACGAAATCCGGTCGTATCGACATCATGGCCCATGACGAAACTATCGTGAAGTGTGCAGTAGGCGCACGTGTTGATAGACCGACTTCTGGTAAATTCCGAGGTTTCGTATTCCACAACGTATCGAAGCCTCTTGACAGAACCATCACTACTATCCCTTCTGGTGGTGAAGTCAACGCATTCATCTGGAGTGATCACTACACTTACAACGGCTCAGTTCTTGTTCCTCCTGGCGTAACGACTCGTGCAACGATCACTGGAACTCGTACATCTGGTTCAGTTCTCACTGGTGGTGACTCCGTTTTCGATACGGCTGCTGTTCTCGCTGCATTCCCGAGTGCAGTGATTACTCGTTCATATCAGTGGCGTCGTCACAAGCCTGCTGTGAAGTGGACTGGGTGGTCTGAAGGTCTCGGCTGGATGTGCGAATGGATCGATGGTGCTACGTCTCAGAGCTACACTCTCACCGACGACGATCAAGGTTGCCTGGTAAGTCGTGTAGATCGTATTCATCTCACGTTCACCGAAGGTGGCGTATCGAAGACTGTTACGGCTCTCGCTTACGATGGTTCGTTCAAGGACTCAACTCCGATTACGAGAACTGGAGATCTCGCTGTTGCACTTCCGACTCTTGCAACTTCGTCGAACATCTCTGCTTCTGCAACTGAAGGCACTCTCGTCCTTGATCTTGCAGCACTGATCACCGGTGAAACGAGGAGTCTTCTGCATCCGAGCAGAGCTTTCGATCCGTACACTGGAACTGCCATTACGGTAGACTCCAATGGTGACATCGTAAGAGGTGCAGGTACTCTGACTGTCGGAAGCACTTTCAGTGTGAAGATCCGTCAGAAGAGAGGCATAGATATCGTAGACTCGACAATCAACTTCACTGTTATTACGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cde48246e46f6aa2d71e6ed4ffd98d76524dc6b223a2719203b77e433d92e57a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2723
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank