Protein

View in Explore
Genbank accession
QIG76262.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MARKTIDELPVASPEAVATGTLLIADENGLEYRATTAILGGVHLFFTDEDDQTPFVFGRLTSPGRTVENIQITLTATPVGGGTAVVRTTLTDALGNFTYDFTSSLARGVSYTIEGKAASYLAETTTKTIAALSAPIAALTATSTAKVGDDITVDPPSFSGSPTVIRYRYLRGSSYVIPGADSSVYTLQPDDDADTITPQVQATNAGGDSPWYPATAIGPVSNKESVLLTNPVISGSTSLGGRVVVSEPGSASNYATVKSDEWQLDGARIPTTKAPLQRYFAGAANASAPTTYPDGSNHHGVNLSSTMYTGSNTYSYSVGVSATENDYLVSAMGAAGGNEGPQVYDLFIKHINTNAALRFQMFAAKYRGGVLQEEVQMPKIGVAAGTELNELTATPNAVNRWTLTHDFGEWLAGDVLVFRQRARNTSGSSTNNYQWDARNGASYAMLPIGPVNDLQKTLSTFTTRADMAGKKVRLARTFSNRNNDVIGYSNEITLEAAATQTAVPANVTLPAIVTSSDRSNNTWQADFGAWSNQPSGFAIQWLDNGADISGATQMSYKIPSSLEGHEVSFRVTATNDIGSTSAVSLARTVLPAAVFYKTDTGNDSNDGSTPELAKQTLNGSDSIPSGSTAIMQGDFGTRLRLGNSRNYEGVDTSLTSIGSTSISYAIDQYTDDGSIGRSNIKLSKFRIKSGDRAINARQGSNWVIEDVILENVGFSPIVSAENASGMMFYKNSGLTLRRVQFLLVNSDALFSDTNDRVLVEDCTFLPVFTSEGDNIQTRADRLVSGSPGPHQKGFVLRGSYLDMHSRKTSSGKGCLVTNMQDYAYIHDNDFDGNNFVHGTDEGDNHVFTRNICRYARKNTYSFGYGIGGYDDEPASHNHHVYDNYWYDINRAHSYTGIPVTGYTGTKSGRIDIMAHDETIVKCAVGARVDRPTSGKFRGFVFHNVSKPLDRTITTIPSGGEVNAFIWSDHYTYNGSVLVPPGVTTRATITGTRTSGSVLTGGDSVFDTAAVLAAFPSAVITRSYQWRRHKPAVKWTGWSEGLGWMCEWIDGATSQSYTLTDDDQGCLVSRVDRIHLTFTEGGVSKTVTALAYDGSFKDSTPITRTGDLAVALPTLATSSNISASATEGTLVLDLAALITGETRSLLHPSRAFDPYTGTAITVDSNGDIVRGAGTLTVGSTFSVKIRQKRGIDIVDSTINFTVIT
Physico‐chemical
properties
protein length:1203 AA
molecular weight: 128712,09690 Da
isoelectric point:5,43912
aromaticity:0,08645
hydropathy:-0,24705

Domains

Domains [InterPro]
G3DSA:2.60.40.2700
504–585
G3DSA:2.60.40.2700 IPR011050 G3DSA:2.60.40.2700
QIG76262.1
1 1203
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_I34
[NCBI] 		2509592 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG76262.1 [NCBI]
Genbank nucleotide accession
MN988553 [NCBI]
CDS location
range 59547 -> 63158
strand -
CDS
ATGGCCCGCAAAACTATCGATGAACTTCCGGTTGCTTCGCCTGAAGCAGTTGCAACTGGAACTCTTCTAATCGCTGACGAGAACGGACTTGAGTATCGCGCAACGACTGCTATTCTCGGTGGCGTACATCTTTTCTTCACTGACGAAGATGATCAGACTCCTTTCGTATTCGGTCGTCTCACGAGTCCTGGTCGTACTGTTGAAAACATTCAGATCACGCTTACGGCTACTCCAGTAGGCGGCGGTACTGCAGTAGTGAGGACGACTCTCACTGACGCTCTTGGAAACTTCACTTACGACTTCACATCTTCGCTTGCTCGAGGAGTGTCTTATACAATCGAAGGTAAAGCTGCATCGTATCTCGCTGAAACGACCACGAAGACGATTGCTGCTCTGTCTGCTCCGATTGCAGCTCTTACTGCTACTTCTACTGCGAAGGTAGGTGACGACATTACTGTCGATCCGCCTTCTTTCAGCGGAAGTCCGACTGTTATTCGTTATCGGTATCTTCGTGGTTCGTCTTACGTCATTCCTGGTGCAGATAGTTCTGTCTACACGCTTCAGCCTGATGACGACGCTGACACTATCACTCCTCAAGTCCAGGCTACTAACGCTGGTGGTGATAGTCCTTGGTATCCTGCGACTGCTATCGGTCCAGTCTCGAACAAAGAATCAGTTCTTCTCACAAATCCAGTTATCTCTGGATCGACTTCTCTAGGCGGTCGAGTAGTTGTTTCCGAGCCTGGTTCTGCTTCGAACTATGCTACAGTTAAGTCTGACGAATGGCAGCTCGACGGTGCGAGAATTCCGACGACGAAGGCTCCACTTCAGCGTTATTTCGCAGGCGCAGCTAACGCTTCTGCTCCTACTACCTATCCTGACGGTAGCAATCATCACGGCGTAAACCTTAGTTCGACAATGTACACTGGCTCGAACACGTACAGTTATTCAGTCGGAGTCAGTGCTACCGAAAACGACTATCTAGTTTCTGCTATGGGTGCAGCTGGCGGAAACGAAGGTCCTCAGGTATACGATCTGTTCATAAAACATATCAACACGAATGCCGCGCTTCGTTTCCAGATGTTTGCTGCCAAATATCGAGGCGGTGTGCTGCAAGAAGAAGTGCAGATGCCAAAGATCGGAGTAGCTGCAGGAACCGAACTTAACGAACTTACTGCCACCCCGAATGCTGTCAACCGTTGGACTCTCACTCACGACTTCGGAGAGTGGCTTGCAGGCGACGTCCTTGTATTCCGTCAACGAGCCAGAAACACGTCTGGATCTTCGACGAACAACTACCAGTGGGATGCTCGAAACGGCGCTTCTTACGCGATGCTTCCGATCGGTCCTGTAAACGATCTTCAGAAGACTCTCTCAACATTCACCACTCGCGCAGACATGGCTGGCAAGAAGGTTCGTCTCGCTCGTACTTTCTCGAACAGAAACAACGACGTTATCGGCTATTCGAACGAAATCACTCTCGAAGCAGCAGCTACGCAGACTGCTGTTCCTGCGAACGTTACTCTTCCTGCAATCGTAACTTCTTCTGATCGTTCGAATAACACATGGCAAGCTGACTTCGGTGCCTGGAGCAATCAACCCAGCGGTTTCGCTATCCAGTGGCTTGATAACGGTGCTGACATCTCTGGCGCTACGCAGATGAGCTATAAAATTCCGTCTTCTCTCGAAGGTCACGAAGTATCCTTCAGAGTCACGGCTACCAACGACATAGGATCTACTTCAGCCGTGAGTCTCGCAAGAACAGTTCTTCCTGCAGCAGTGTTCTATAAAACCGATACAGGTAACGACTCGAACGACGGCTCGACTCCGGAACTCGCTAAGCAGACTCTTAATGGATCTGACTCGATTCCGTCAGGTTCGACTGCGATCATGCAAGGCGATTTCGGAACTCGTCTTCGACTCGGTAACAGCAGGAATTACGAAGGTGTAGATACGTCTCTGACCTCTATCGGTAGCACTTCTATCTCTTACGCTATCGACCAATACACGGACGACGGTTCTATCGGTCGCTCGAACATCAAACTGTCGAAATTCCGTATCAAGTCTGGCGATCGTGCCATCAACGCACGTCAAGGTTCGAACTGGGTTATCGAAGACGTGATCTTGGAGAACGTCGGGTTCTCTCCTATCGTTTCTGCAGAAAATGCTTCTGGCATGATGTTCTACAAGAACAGCGGTCTTACTCTTCGTCGAGTTCAGTTCCTGCTCGTCAACTCGGATGCCTTGTTCTCTGACACGAATGATAGAGTTCTAGTCGAAGATTGCACTTTCCTTCCTGTGTTCACTTCGGAAGGTGACAATATTCAGACTCGAGCCGATCGTCTCGTAAGTGGAAGTCCTGGCCCTCACCAGAAGGGTTTCGTCCTTCGTGGAAGCTATCTCGATATGCATTCGAGAAAGACTTCGTCTGGTAAAGGCTGTCTCGTTACCAACATGCAAGACTACGCCTACATCCACGATAACGATTTCGACGGTAACAACTTCGTTCACGGAACTGACGAAGGTGATAACCACGTTTTCACGAGAAATATCTGCAGATATGCTCGAAAGAATACGTATTCGTTCGGCTATGGTATCGGTGGCTACGATGACGAGCCTGCTTCTCATAACCACCATGTCTATGACAACTACTGGTACGATATCAATCGTGCTCACTCGTACACTGGTATTCCTGTCACAGGATATACTGGCACGAAATCCGGTCGTATCGACATCATGGCCCATGACGAAACTATCGTGAAGTGTGCAGTAGGCGCACGTGTTGATAGACCGACTTCTGGTAAATTCCGAGGTTTCGTATTCCACAACGTATCGAAGCCTCTTGACAGAACCATCACTACTATCCCTTCTGGTGGTGAAGTCAACGCATTCATCTGGAGTGATCACTACACTTACAACGGCTCAGTTCTTGTTCCTCCTGGCGTAACGACTCGTGCAACGATCACTGGAACTCGTACATCTGGTTCAGTTCTCACTGGTGGTGACTCCGTTTTCGATACGGCTGCTGTTCTCGCTGCATTCCCGAGTGCAGTGATTACTCGTTCATATCAGTGGCGTCGTCACAAGCCTGCTGTGAAGTGGACTGGGTGGTCTGAAGGTCTCGGCTGGATGTGCGAATGGATCGATGGTGCTACGTCTCAGAGCTACACTCTCACCGACGACGATCAAGGTTGCCTGGTAAGTCGTGTAGATCGTATTCATCTCACGTTCACCGAAGGTGGCGTATCGAAGACTGTTACGGCTCTCGCTTACGATGGTTCGTTCAAGGACTCAACTCCGATTACGAGAACTGGAGATCTCGCTGTTGCACTTCCGACTCTTGCAACTTCGTCGAACATCTCTGCTTCTGCAACTGAAGGCACTCTCGTCCTTGATCTTGCAGCACTGATCACCGGTGAAACGAGGAGTCTTCTGCATCCGAGCAGAGCTTTCGATCCGTACACTGGAACTGCCATTACGGTAGACTCCAATGGTGACATCGTAAGAGGTGCAGGTACTCTGACTGTCGGAAGCACTTTCAGTGTGAAGATCCGTCAGAAGAGAGGCATAGATATCGTAGACTCGACAATCAACTTCACTGTTATTACGTGA

Tertiary structure

PDB ID
cde48246e46f6aa2d71e6ed4ffd98d76524dc6b223a2719203b77e433d92e57a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2362
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank