Phage RBP Database

Genbank accession

AAT38371.1 [GenBank]

Protein name

gp12

RBP type

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,54

Seq2Symm

C3 confidence 0,021

C3	0,021
C1	0,012
C6	0,010

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MPKAAPQQVSFDAGELSPLLGARVDLAKYPNGCQVMENFIATVQGPAIRRGGKRFVAATKDSTKQSWLLPFIVADGIAYMLEFGDHYIRFFVNRGQLVNAGAPVEIATPYALADLTTEDGTFAIRATQSADTMYLFHGGYPTQKLLRTSATTFSLQPVTFVGGPFAAVNSDNNVRVHASAGTGAVTLVASASVFRPSDVGTLFYLEQEDNSFVKPWVVHQKIGPSELRRVGDRVYLCTAVGTATPQVTGTETPTHTSGSRWDGTGQDESATDEYGSIGAEWEYQHSGYGTVLITGYTNDQVVTGTVATNDPADPGMLPNTVVTLTGTYKWARSLFNSTDGFPQMGTFWRNRLCLMRDRWLAMSVSADFETFKTKDADQQTDDSAIVQQLNARQLNKLAWMVESDSLLIGMTGDEWVIGPANASQPVSAANLNAARRTSYGSKRIQPVQVGGTIMFVQKAGRKLRDFKYDFSSDNYVSTDVTKIADHITRGRAGTNSGIMSLCFQQEPHSVVWAARADGQLIGCTYDEEAGRSDVYGWHRHPDANGFVECVASMPAPDGASDDLWVIVRRQVNGQTVRYVEYLNPALQDDEPQSSAFYVDAGITYNGVPTSTIAGLGHLEGVTVAVLTDGAVHPSRTVTAGAITLDWSASIVHIGVPTTCRIQTMQLNAGAANGTAQGKTKRVTNIATRFSRSLGGVVGPTFDDNDLEQLSFRKPSNAMDRAVPLFDGDMESDWRGGYEGQSWICYQNDQPLPVTLLGFFPILDTQDDR

Physico‐chemical properties

protein length:	768 AA
molecular weight:	83345,17570 Da
isoelectric point:	5,18533
aromaticity:	0,09245
hydropathy:	-0,24922

Domain architecture

AAT38371.1

1 768 aa

TTP 346–487 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR058003
TTP

IPR058003

AAT38371.1

1768 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0058
STR

DC_0058

AAT38371.1

1768 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR058003	TTP	DC_0684	346	487	InterPro cluster	Tail tubular protein gp12	Central	High	Text match	1810 proteins / 1902 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AAT38371.1

1 768 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	188	188	0,8892
Central domain	189	387	200	0,0313
C-terminal	388	768	380	0,1162

Note: Constraints were applied during segmentation.
Fixed 21 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Burkholderia phage BcepC6B [NCBI] · taxon 2883949

Uroviricota Caudoviricetes Ryyoungvirus

Host

Burkholderia cepacia [NCBI] · taxon 292

cellular organisms Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales

Genbank protein accession

AAT38371.1 [NCBI]

Genbank nucleotide accession

AY605181 [NCBI]

CDS location

range 8574 -> 10880
strand +

CDS

ATGCCGAAGGCAGCACCGCAGCAGGTTTCGTTCGACGCTGGCGAGCTCTCGCCGTTGCTCGGTGCACGTGTCGATCTGGCGAAATACCCGAACGGTTGCCAGGTGATGGAGAACTTCATCGCGACGGTGCAGGGCCCGGCGATCCGCCGCGGCGGTAAGCGCTTCGTCGCGGCCACGAAGGATTCGACGAAACAGTCGTGGCTCCTGCCGTTCATCGTCGCGGACGGCATCGCGTATATGCTCGAGTTCGGCGACCACTACATCCGCTTTTTCGTGAATCGCGGGCAGCTTGTGAACGCCGGCGCGCCCGTCGAGATCGCGACGCCGTACGCGCTCGCGGACCTGACGACCGAGGACGGAACGTTCGCGATCCGCGCGACGCAGAGCGCCGACACGATGTACCTGTTTCACGGCGGCTACCCTACGCAGAAGCTGCTGCGCACAAGCGCGACGACGTTTTCTCTGCAGCCCGTGACGTTTGTCGGCGGCCCGTTCGCGGCCGTGAACAGCGACAACAACGTGAGGGTGCATGCCAGCGCGGGCACCGGCGCCGTTACTCTGGTCGCAAGCGCATCGGTATTCAGGCCGTCCGACGTCGGCACGTTGTTCTACCTCGAGCAAGAGGACAATTCGTTCGTCAAGCCGTGGGTCGTCCATCAGAAGATCGGTCCTAGCGAACTGCGCCGCGTCGGCGATCGCGTCTATCTGTGCACGGCGGTCGGCACGGCGACGCCGCAGGTTACGGGCACCGAAACGCCGACGCACACGTCCGGTAGTCGATGGGACGGCACCGGGCAGGACGAATCGGCGACAGACGAATACGGGTCGATCGGCGCGGAATGGGAATACCAGCACTCGGGCTATGGAACGGTGCTGATCACGGGCTACACCAACGACCAGGTGGTCACGGGTACGGTGGCGACGAACGACCCGGCCGACCCCGGCATGCTGCCGAACACCGTCGTCACGCTCACCGGCACCTACAAATGGGCCCGATCGCTGTTCAATTCGACGGATGGGTTCCCGCAGATGGGGACGTTTTGGCGCAATCGGCTTTGCCTGATGCGCGACCGGTGGCTCGCGATGTCGGTGTCTGCCGACTTCGAGACGTTCAAGACGAAGGACGCCGACCAGCAGACCGATGACTCAGCGATCGTGCAGCAGCTCAACGCCCGGCAGCTGAACAAGCTTGCGTGGATGGTGGAGTCCGACAGCCTGCTGATCGGCATGACGGGCGATGAGTGGGTGATTGGGCCCGCGAACGCGTCGCAGCCGGTCAGCGCGGCCAACCTGAACGCCGCGCGCCGCACATCGTACGGTTCGAAAAGGATCCAGCCGGTGCAGGTCGGCGGCACGATCATGTTCGTGCAGAAGGCCGGCCGCAAGCTGCGCGATTTCAAATACGACTTTTCGTCCGACAACTACGTGTCGACGGACGTCACGAAGATCGCCGACCACATCACGCGCGGCCGCGCTGGCACGAACAGCGGCATCATGTCGCTCTGCTTCCAGCAGGAGCCGCATTCCGTCGTGTGGGCGGCCCGCGCCGACGGCCAGCTGATCGGCTGCACGTACGACGAAGAAGCCGGCCGGAGCGACGTCTACGGCTGGCATCGGCATCCGGACGCGAACGGTTTCGTCGAGTGCGTCGCGTCGATGCCCGCGCCGGACGGCGCGTCTGATGACCTGTGGGTGATCGTCCGCCGCCAGGTCAACGGGCAGACCGTGCGCTACGTCGAATACCTGAACCCCGCGCTGCAGGATGACGAGCCGCAATCGTCCGCCTTCTACGTGGACGCCGGTATCACGTACAACGGCGTGCCGACGTCGACTATCGCCGGCCTCGGGCACCTCGAAGGCGTTACGGTCGCGGTGCTGACCGACGGCGCAGTGCACCCATCGCGTACGGTTACGGCCGGCGCGATCACGCTCGACTGGTCCGCATCGATCGTGCATATCGGAGTCCCGACGACATGTCGCATTCAAACTATGCAGCTCAACGCCGGCGCCGCAAACGGGACAGCGCAAGGAAAGACAAAGCGCGTCACGAACATCGCGACACGCTTCTCGCGGAGCCTGGGCGGCGTCGTTGGGCCAACGTTCGACGACAACGATCTCGAGCAACTGAGCTTCCGTAAGCCGTCGAACGCGATGGACCGCGCGGTGCCGCTGTTCGATGGCGACATGGAATCGGACTGGCGCGGCGGGTACGAGGGGCAGTCGTGGATCTGCTACCAGAACGACCAACCGTTGCCGGTGACGCTGCTCGGCTTCTTCCCGATTCTGGATACGCAAGATGATCGCTGA

Title	Authors	Date	PMID	Source
Complete genomic sequence of Burkholderia cepacia complex phage BcepC6B	Summer,E.J., Christian,B.N., Collins,J., Morrison,W., Patel,P., Wells,W., Mebane,L., Gonzalez,C.F. and Young,R.F.	2004-05	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature