Protein

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Genbank accession
AAT38371.1 [GenBank]
Protein name
gp12
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPKAAPQQVSFDAGELSPLLGARVDLAKYPNGCQVMENFIATVQGPAIRRGGKRFVAATKDSTKQSWLLPFIVADGIAYMLEFGDHYIRFFVNRGQLVNAGAPVEIATPYALADLTTEDGTFAIRATQSADTMYLFHGGYPTQKLLRTSATTFSLQPVTFVGGPFAAVNSDNNVRVHASAGTGAVTLVASASVFRPSDVGTLFYLEQEDNSFVKPWVVHQKIGPSELRRVGDRVYLCTAVGTATPQVTGTETPTHTSGSRWDGTGQDESATDEYGSIGAEWEYQHSGYGTVLITGYTNDQVVTGTVATNDPADPGMLPNTVVTLTGTYKWARSLFNSTDGFPQMGTFWRNRLCLMRDRWLAMSVSADFETFKTKDADQQTDDSAIVQQLNARQLNKLAWMVESDSLLIGMTGDEWVIGPANASQPVSAANLNAARRTSYGSKRIQPVQVGGTIMFVQKAGRKLRDFKYDFSSDNYVSTDVTKIADHITRGRAGTNSGIMSLCFQQEPHSVVWAARADGQLIGCTYDEEAGRSDVYGWHRHPDANGFVECVASMPAPDGASDDLWVIVRRQVNGQTVRYVEYLNPALQDDEPQSSAFYVDAGITYNGVPTSTIAGLGHLEGVTVAVLTDGAVHPSRTVTAGAITLDWSASIVHIGVPTTCRIQTMQLNAGAANGTAQGKTKRVTNIATRFSRSLGGVVGPTFDDNDLEQLSFRKPSNAMDRAVPLFDGDMESDWRGGYEGQSWICYQNDQPLPVTLLGFFPILDTQDDR
Physico‐chemical
properties
protein length:768 AA
molecular weight: 83345,17570 Da
isoelectric point:5,18533
aromaticity:0,09245
hydropathy:-0,24922

Domains

Domains [InterPro]
DC_0058
STR
1–759
DC_0058
IPR058003
TTP
346–487
IPR058003
AAT38371.1
1 768
Architecture
STR
STR 1-759 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAT38371.1
1 768
Domain Start End Length (AA) Confidence
N-terminal 1 188 188 0,8892
Central domain 189 387 200 0,0313
C-terminal 388 768 380 0,1162
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-188
Central
189-387
C-terminal
388-768

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage BcepC6B
[NCBI] 		2883949 Uroviricota > Caudoviricetes > Ryyoungvirus >
Host Burkholderia cepacia
[NCBI] 		292 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAT38371.1 [NCBI]
Genbank nucleotide accession
AY605181 [NCBI]
CDS location
range 8574 -> 10880
strand +
CDS
ATGCCGAAGGCAGCACCGCAGCAGGTTTCGTTCGACGCTGGCGAGCTCTCGCCGTTGCTCGGTGCACGTGTCGATCTGGCGAAATACCCGAACGGTTGCCAGGTGATGGAGAACTTCATCGCGACGGTGCAGGGCCCGGCGATCCGCCGCGGCGGTAAGCGCTTCGTCGCGGCCACGAAGGATTCGACGAAACAGTCGTGGCTCCTGCCGTTCATCGTCGCGGACGGCATCGCGTATATGCTCGAGTTCGGCGACCACTACATCCGCTTTTTCGTGAATCGCGGGCAGCTTGTGAACGCCGGCGCGCCCGTCGAGATCGCGACGCCGTACGCGCTCGCGGACCTGACGACCGAGGACGGAACGTTCGCGATCCGCGCGACGCAGAGCGCCGACACGATGTACCTGTTTCACGGCGGCTACCCTACGCAGAAGCTGCTGCGCACAAGCGCGACGACGTTTTCTCTGCAGCCCGTGACGTTTGTCGGCGGCCCGTTCGCGGCCGTGAACAGCGACAACAACGTGAGGGTGCATGCCAGCGCGGGCACCGGCGCCGTTACTCTGGTCGCAAGCGCATCGGTATTCAGGCCGTCCGACGTCGGCACGTTGTTCTACCTCGAGCAAGAGGACAATTCGTTCGTCAAGCCGTGGGTCGTCCATCAGAAGATCGGTCCTAGCGAACTGCGCCGCGTCGGCGATCGCGTCTATCTGTGCACGGCGGTCGGCACGGCGACGCCGCAGGTTACGGGCACCGAAACGCCGACGCACACGTCCGGTAGTCGATGGGACGGCACCGGGCAGGACGAATCGGCGACAGACGAATACGGGTCGATCGGCGCGGAATGGGAATACCAGCACTCGGGCTATGGAACGGTGCTGATCACGGGCTACACCAACGACCAGGTGGTCACGGGTACGGTGGCGACGAACGACCCGGCCGACCCCGGCATGCTGCCGAACACCGTCGTCACGCTCACCGGCACCTACAAATGGGCCCGATCGCTGTTCAATTCGACGGATGGGTTCCCGCAGATGGGGACGTTTTGGCGCAATCGGCTTTGCCTGATGCGCGACCGGTGGCTCGCGATGTCGGTGTCTGCCGACTTCGAGACGTTCAAGACGAAGGACGCCGACCAGCAGACCGATGACTCAGCGATCGTGCAGCAGCTCAACGCCCGGCAGCTGAACAAGCTTGCGTGGATGGTGGAGTCCGACAGCCTGCTGATCGGCATGACGGGCGATGAGTGGGTGATTGGGCCCGCGAACGCGTCGCAGCCGGTCAGCGCGGCCAACCTGAACGCCGCGCGCCGCACATCGTACGGTTCGAAAAGGATCCAGCCGGTGCAGGTCGGCGGCACGATCATGTTCGTGCAGAAGGCCGGCCGCAAGCTGCGCGATTTCAAATACGACTTTTCGTCCGACAACTACGTGTCGACGGACGTCACGAAGATCGCCGACCACATCACGCGCGGCCGCGCTGGCACGAACAGCGGCATCATGTCGCTCTGCTTCCAGCAGGAGCCGCATTCCGTCGTGTGGGCGGCCCGCGCCGACGGCCAGCTGATCGGCTGCACGTACGACGAAGAAGCCGGCCGGAGCGACGTCTACGGCTGGCATCGGCATCCGGACGCGAACGGTTTCGTCGAGTGCGTCGCGTCGATGCCCGCGCCGGACGGCGCGTCTGATGACCTGTGGGTGATCGTCCGCCGCCAGGTCAACGGGCAGACCGTGCGCTACGTCGAATACCTGAACCCCGCGCTGCAGGATGACGAGCCGCAATCGTCCGCCTTCTACGTGGACGCCGGTATCACGTACAACGGCGTGCCGACGTCGACTATCGCCGGCCTCGGGCACCTCGAAGGCGTTACGGTCGCGGTGCTGACCGACGGCGCAGTGCACCCATCGCGTACGGTTACGGCCGGCGCGATCACGCTCGACTGGTCCGCATCGATCGTGCATATCGGAGTCCCGACGACATGTCGCATTCAAACTATGCAGCTCAACGCCGGCGCCGCAAACGGGACAGCGCAAGGAAAGACAAAGCGCGTCACGAACATCGCGACACGCTTCTCGCGGAGCCTGGGCGGCGTCGTTGGGCCAACGTTCGACGACAACGATCTCGAGCAACTGAGCTTCCGTAAGCCGTCGAACGCGATGGACCGCGCGGTGCCGCTGTTCGATGGCGACATGGAATCGGACTGGCGCGGCGGGTACGAGGGGCAGTCGTGGATCTGCTACCAGAACGACCAACCGTTGCCGGTGACGCTGCTCGGCTTCTTCCCGATTCTGGATACGCAAGATGATCGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3a084e83747b67419a7399796bd5da796a6ead1852e507d012ac1a653f3b6a30
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8955
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genomic sequence of Burkholderia cepacia complex phage BcepC6B Summer,E.J., Christian,B.N., Collins,J., Morrison,W., Patel,P., Wells,W., Mebane,L., Gonzalez,C.F. and Young,R.F. 2004-05 — GenBank