Protein

View in Explore
Genbank accession
AFU63930.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,43
Seq2Symm
C1 confidence 0,997
C1 0,997
C2 0,123
I 0,009
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MEKMMASFGNGYTKTQVISENNSIKYKISFAAGSVFSTPSSAYFTFQDNPIGDQQDGAGINIRVFNPALNTVSAKKTFLLTPNNNDPGNRAFIEYLSTFTQDNTNLLIFTTSGDIKTSNLVENKFKSIYSTMWPNKWMTSRYSCTYCGLFSIKNNKIIAENVTYSDGVLRDEDIRPALEFVYDKADDIGATGFSYRAVEDFEEYTSSAATIKRYPVDSASGVEISSIGISPGDILFWSFEFLHGDNIPPEVPGTNNNKIRIEIRWLNSSGGWIKSVNVDSNHANAGKWIQHEQTVEVPADAARIVILASKTSPTDTVGTGGVRSMILTETSRATEALTSPSAISVNGIRLNTIVSGDNPALLILPANEVDSTGKPLPGEDVSGIIYSSDWREFEKNI
Physico‐chemical
properties
protein length:397 AA
molecular weight: 43501,04310 Da
isoelectric point:4,92597
aromaticity:0,09824
hydropathy:-0,27607

Domains

View on InterPro
Domain architecture
AFU63930.1
1 397 aa
LEC 22–197 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
AFU63930.1
1 397 aa
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,3764
Central domain 141 386 247 0,5780
C-terminal 387 397 10 0,2298
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Salmonella phage STML-198 [NCBI] · taxon 1204531
Uroviricota Caudoviricetes Pantevenvirales Tevenvirinae Gelderlandvirus
Host
Salmonella [NCBI] · taxon 590
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Coding sequence (CDS)

Genbank protein accession
AFU63930.1 [NCBI]
Genbank nucleotide accession
JX181825 [NCBI]
CDS location
range 27725 -> 28918
strand +
CDS
ATGGAAAAAATGATGGCGAGTTTTGGTAACGGATATACCAAAACTCAAGTTATTTCTGAAAATAATTCCATCAAATACAAAATTTCATTTGCTGCGGGGTCGGTTTTTTCGACCCCTTCTTCTGCTTATTTTACCTTTCAGGATAATCCAATAGGTGACCAGCAAGATGGTGCTGGTATAAATATCAGAGTTTTTAATCCAGCATTGAATACTGTATCTGCTAAGAAAACATTTTTATTGACACCCAATAATAATGACCCAGGCAATAGAGCATTCATTGAATATTTGTCAACATTTACTCAAGATAATACTAACTTGTTAATATTCACCACATCAGGTGATATTAAAACGAGCAATTTAGTAGAGAATAAATTTAAGTCCATTTATTCAACTATGTGGCCAAATAAATGGATGACATCTCGGTATTCATGTACTTATTGCGGTTTATTTTCAATAAAAAATAATAAAATTATTGCCGAAAACGTAACATATTCTGATGGAGTTCTTCGGGACGAAGACATCAGACCTGCTTTAGAATTCGTTTATGATAAAGCTGATGATATTGGAGCTACCGGGTTTTCTTATAGAGCTGTTGAAGATTTTGAAGAATACACTAGTTCCGCGGCAACAATAAAAAGATATCCAGTTGATTCTGCTTCGGGCGTAGAAATTAGCTCAATTGGAATATCTCCTGGCGATATTCTGTTCTGGTCATTTGAATTTTTGCATGGAGATAATATTCCGCCAGAAGTTCCAGGGACAAATAATAATAAAATAAGAATAGAAATAAGATGGTTAAATTCATCCGGAGGGTGGATTAAATCAGTTAATGTTGACTCTAACCACGCAAATGCTGGAAAATGGATACAGCATGAACAAACTGTTGAAGTCCCTGCTGACGCTGCCCGGATAGTTATTCTTGCTTCTAAAACGTCTCCAACTGATACGGTCGGTACTGGAGGTGTTCGTAGTATGATTTTAACTGAAACTTCGCGAGCTACTGAGGCATTAACTTCTCCATCTGCGATATCAGTTAATGGTATTCGTTTGAATACTATAGTTTCAGGAGATAACCCGGCGCTGCTTATTTTACCTGCTAACGAAGTTGATTCAACTGGCAAACCATTACCAGGTGAAGATGTTTCAGGAATAATTTACAGTTCTGATTGGAGAGAGTTTGAGAAAAATATTTAA

Genome Context

Tertiary structure

AFU63930.1
ESMFold structure
Source ESMFold
pLDDT 67.0
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Bacteriophages quickly and effectively reduce contamination of various foods with Salmonella Woolston,J., Parks,A.R., Hanna,L.F., Charbonneau,D. and Sulakvelidze,A. 2016-07-02 — GenBank