Protein

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Genbank accession
AFU63930.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MEKMMASFGNGYTKTQVISENNSIKYKISFAAGSVFSTPSSAYFTFQDNPIGDQQDGAGINIRVFNPALNTVSAKKTFLLTPNNNDPGNRAFIEYLSTFTQDNTNLLIFTTSGDIKTSNLVENKFKSIYSTMWPNKWMTSRYSCTYCGLFSIKNNKIIAENVTYSDGVLRDEDIRPALEFVYDKADDIGATGFSYRAVEDFEEYTSSAATIKRYPVDSASGVEISSIGISPGDILFWSFEFLHGDNIPPEVPGTNNNKIRIEIRWLNSSGGWIKSVNVDSNHANAGKWIQHEQTVEVPADAARIVILASKTSPTDTVGTGGVRSMILTETSRATEALTSPSAISVNGIRLNTIVSGDNPALLILPANEVDSTGKPLPGEDVSGIIYSSDWREFEKNI
Physico‐chemical
properties
protein length:397 AA
molecular weight: 43501,04310 Da
isoelectric point:4,92597
aromaticity:0,09824
hydropathy:-0,27607

Domains

Domains [InterPro]
DC_0912
STR
1–397
DC_0912
PS52031
LEC
22–197
PS52031
AFU63930.1
1 397
Architecture
STR
STR 1-397
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFU63930.1
1 397
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,3764
Central domain 141 386 247 0,5780
C-terminal 387 397 10 0,2298
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-386
C-terminal
387-397

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage STML-198
[NCBI] 		1204531 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Gelderlandvirus
Host Salmonella
[NCBI] 		590 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFU63930.1 [NCBI]
Genbank nucleotide accession
JX181825 [NCBI]
CDS location
range 27725 -> 28918
strand +
CDS
ATGGAAAAAATGATGGCGAGTTTTGGTAACGGATATACCAAAACTCAAGTTATTTCTGAAAATAATTCCATCAAATACAAAATTTCATTTGCTGCGGGGTCGGTTTTTTCGACCCCTTCTTCTGCTTATTTTACCTTTCAGGATAATCCAATAGGTGACCAGCAAGATGGTGCTGGTATAAATATCAGAGTTTTTAATCCAGCATTGAATACTGTATCTGCTAAGAAAACATTTTTATTGACACCCAATAATAATGACCCAGGCAATAGAGCATTCATTGAATATTTGTCAACATTTACTCAAGATAATACTAACTTGTTAATATTCACCACATCAGGTGATATTAAAACGAGCAATTTAGTAGAGAATAAATTTAAGTCCATTTATTCAACTATGTGGCCAAATAAATGGATGACATCTCGGTATTCATGTACTTATTGCGGTTTATTTTCAATAAAAAATAATAAAATTATTGCCGAAAACGTAACATATTCTGATGGAGTTCTTCGGGACGAAGACATCAGACCTGCTTTAGAATTCGTTTATGATAAAGCTGATGATATTGGAGCTACCGGGTTTTCTTATAGAGCTGTTGAAGATTTTGAAGAATACACTAGTTCCGCGGCAACAATAAAAAGATATCCAGTTGATTCTGCTTCGGGCGTAGAAATTAGCTCAATTGGAATATCTCCTGGCGATATTCTGTTCTGGTCATTTGAATTTTTGCATGGAGATAATATTCCGCCAGAAGTTCCAGGGACAAATAATAATAAAATAAGAATAGAAATAAGATGGTTAAATTCATCCGGAGGGTGGATTAAATCAGTTAATGTTGACTCTAACCACGCAAATGCTGGAAAATGGATACAGCATGAACAAACTGTTGAAGTCCCTGCTGACGCTGCCCGGATAGTTATTCTTGCTTCTAAAACGTCTCCAACTGATACGGTCGGTACTGGAGGTGTTCGTAGTATGATTTTAACTGAAACTTCGCGAGCTACTGAGGCATTAACTTCTCCATCTGCGATATCAGTTAATGGTATTCGTTTGAATACTATAGTTTCAGGAGATAACCCGGCGCTGCTTATTTTACCTGCTAACGAAGTTGATTCAACTGGCAAACCATTACCAGGTGAAGATGTTTCAGGAATAATTTACAGTTCTGATTGGAGAGAGTTTGAGAAAAATATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2d8b80b9c9b9364e783600f5137e041e5097692231bf8d523233dae9e0a4cca5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6695
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages quickly and effectively reduce contamination of various foods with Salmonella Woolston,J., Parks,A.R., Hanna,L.F., Charbonneau,D. and Sulakvelidze,A. 2016-07-02 — GenBank