Protein

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Genbank accession
YP_010671463.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAISITSKNASGNTATIHGKATPGKRVKGTIGSNTYSIVADENGDWSVSFSNLPPGSVEIKAREYDKINIPKVTDMEISLARLKITGTSPQNTIHPTLSSNLYLENGAPVNDRIIVYEYRVFGNTEWIVDGSELSDISGNSTHVFQDVLEDGTYQFRVTAGTVASGFIEIISNTISVTTDKPNEAPQMPPSYTTWVDSEKNGKYGYLGYMYITQGAASGTSVGRVLALNSPKPAVSYSIDDVDFAIDASTGMITLVNSAKAAGTYYVTITASNIAGSQSTIVPITLVPTAGLTRTYFVDSVNGDDSLNNGKTPATPFKTFGKANGIRGADVFSTYITMYKRGTVYDTPTTTTGHALRNYTTIQAYGDPSQPPPHFITTVPSGFAIGASVSGTLTNVILKDLKITGTQRAISLTDGTGSTFLRLQIEKNSQYGNGIYLHGFVNSNIYHCTLVDGIDGDGMYLRKWRQGRVRWCKFGIPTGTGADNLQITSERKSGMEPADVEVSDNIFRHSVLSNALKGNCVIEGASRVLFERNDCEGNYFCLSSLSSLVTVRDNYLRGAILNDNSFGIGTGAIIHTRDQRWIFNRIEGNWFAMALSGYDDPDGGWQRMDYEILYNHTRKNKAFFKQDRPATGFVTDNIAEQNNNNGFSGSGGAATGYTNSSGTFVTPDYPAFTKGPNFVNSVTTTDPVVKPTISGTMTAGSTLTVTVPEIAGATSVVQWLINDQKVLNETGLTFIIPAGQVVNPNMPTYRNTPTVSCAVVYTLSNGATVAVPARYDDGYCWRYIQS
Physico‐chemical
properties
protein length:786 AA
molecular weight: 84837,77320 Da
isoelectric point:5,99188
aromaticity:0,09542
hydropathy:-0,23524

Domains

Domains [InterPro]
IPR013783
STR
2–69
IPR013783 DC_0928 IPR011050 DC_2066
cd11304
STR
211–287
cd11304
YP_010671463.1
1 786
Architecture
STR
ATT
STR
RBD
STR 2-69 | ATT 70-235 | STR 236-669 | RBD 685-780 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010671463.1
1 786
Domain Start End Length (AA) Confidence
N-terminal 1 189 189 0,9488
Central domain 190 700 512 0,8390
C-terminal 701 786 85 0,6146
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-189
Central
190-700
C-terminal
701-786

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y65
[NCBI] 		2509785 Uroviricota > Caudoviricetes > Kleczkowskaviridae > Cuauhnahuacvirus Y65 >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010671463.1 [NCBI]
Genbank nucleotide accession
NC_070967.1 [NCBI]
CDS location
range 163164 -> 165524
strand -
CDS
ATGGCTATATCAATTACATCTAAAAATGCTTCAGGTAATACTGCAACAATCCATGGTAAAGCTACTCCTGGGAAGCGCGTTAAGGGTACGATAGGATCAAATACTTATTCTATCGTAGCAGACGAGAATGGGGACTGGTCTGTATCGTTCTCAAATTTACCACCAGGAAGTGTTGAGATTAAAGCTCGTGAATACGACAAAATCAATATTCCTAAAGTTACAGATATGGAGATCTCCTTGGCACGTCTAAAAATTACAGGTACTAGTCCGCAAAATACTATCCACCCTACTCTTAGTTCTAATCTATATCTAGAGAATGGCGCTCCTGTCAATGATAGAATCATAGTTTATGAATATAGAGTTTTCGGTAATACAGAATGGATCGTTGACGGTTCAGAATTGTCAGATATTTCTGGTAATTCTACTCACGTATTCCAAGACGTGTTAGAAGATGGTACTTATCAATTCCGTGTAACTGCTGGTACGGTAGCTAGTGGATTCATCGAAATCATCAGTAATACGATTAGTGTTACTACAGATAAGCCTAATGAAGCTCCTCAGATGCCTCCTTCTTATACGACATGGGTCGATAGTGAGAAGAATGGTAAGTATGGATACCTAGGTTATATGTATATAACTCAAGGTGCTGCATCTGGTACGAGTGTAGGGCGTGTCCTTGCATTGAATTCACCTAAGCCTGCTGTTAGCTATTCAATTGATGATGTTGATTTTGCTATTGATGCAAGTACAGGTATGATCACTCTTGTCAATTCAGCAAAAGCTGCAGGAACTTATTATGTAACGATCACAGCATCTAACATTGCTGGAAGTCAGAGTACAATTGTTCCGATTACTCTTGTACCGACTGCTGGACTAACAAGAACCTACTTCGTTGATAGTGTCAATGGTGACGATAGTCTTAACAATGGTAAGACTCCTGCTACTCCATTCAAGACCTTTGGTAAGGCTAATGGTATTAGAGGAGCAGACGTTTTCAGTACATATATCACGATGTATAAGCGTGGTACTGTTTACGATACTCCTACGACTACAACAGGTCACGCACTTCGCAACTATACAACAATTCAAGCTTATGGTGACCCTTCACAACCTCCTCCTCACTTTATAACCACAGTTCCAAGTGGATTTGCAATTGGTGCATCAGTATCTGGTACATTAACTAACGTTATTCTTAAAGATCTGAAGATTACTGGCACACAACGAGCGATCAGTCTTACGGATGGTACAGGAAGTACATTCTTGCGACTCCAGATTGAGAAGAATAGTCAGTACGGTAACGGTATCTACTTACATGGATTCGTTAATAGTAATATCTATCATTGTACACTTGTTGATGGTATTGACGGTGACGGAATGTATCTCCGTAAATGGAGACAAGGTCGAGTTCGTTGGTGTAAGTTTGGTATTCCTACAGGTACTGGAGCAGATAATCTTCAGATCACCTCCGAACGCAAGTCTGGTATGGAACCTGCTGACGTAGAAGTCTCAGACAATATCTTCAGACACTCAGTACTTTCGAATGCTCTTAAAGGTAACTGCGTTATTGAAGGTGCAAGTAGAGTTCTATTCGAACGTAACGACTGTGAAGGTAACTACTTCTGCTTGTCATCACTATCAAGTCTCGTTACCGTACGTGATAACTATCTTCGTGGTGCTATATTGAATGATAACTCATTCGGTATCGGTACTGGTGCAATCATTCATACTCGTGATCAACGATGGATTTTCAATCGTATCGAAGGTAACTGGTTTGCTATGGCACTATCTGGATATGATGACCCAGACGGTGGATGGCAGCGTATGGACTATGAAATCCTTTATAACCATACGCGTAAGAATAAAGCATTCTTCAAGCAAGACCGTCCTGCAACAGGGTTCGTTACAGATAATATCGCAGAGCAGAATAATAACAATGGATTCTCAGGAAGCGGTGGAGCAGCCACAGGTTATACAAACTCTAGTGGTACATTCGTTACACCAGACTATCCTGCATTCACTAAGGGTCCTAACTTCGTTAATTCAGTGACAACTACTGATCCTGTAGTTAAACCTACTATCTCTGGTACGATGACTGCGGGATCTACTCTGACAGTGACTGTTCCTGAAATTGCTGGAGCAACATCTGTTGTTCAATGGCTAATTAATGATCAGAAAGTACTTAATGAAACAGGATTGACGTTCATTATTCCTGCTGGACAAGTTGTTAATCCGAATATGCCAACATATCGTAACACACCAACTGTATCATGTGCTGTAGTTTATACGCTCTCGAATGGAGCAACAGTAGCTGTACCTGCTCGTTATGATGACGGATATTGCTGGAGATACATACAGAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cdb126b916603a4bfcc36c983f392616d3f0c0f533dae1b8f0eea88fc31d8c8d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3162
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank