Phage RBP Database

Genbank accession

BAA36247.1 [GenBank]

Protein name

unknown protein

RBP type

TF

Evidence RBPdetect

Probability 0,83

TF

Evidence RBPdetect2

Probability 0,97

Protein sequence

MTSPKYGGLLTDIGAAALIAASEAGKKWQPTHMLIGDAGGAPGETADPIPSAAQTKLIRQRYRAQLNRLFVSEQSANVLVAELVLPMAIGGFWIREIGLEDADGKFVAVANCPPSFKASVESGSARTQTIRVQIILSGMEHVELIIDDGIVYATQDWVTAKVAADFKGRKVLAGNGLVGGGDLSADRTIALPASGVGAGTYRAVTVNANGIVTAGSNPTTLGGYGITDALHASEAVTTPTANKLLRLNAAGLLPASITGNAATASRLAAPITLSASGDATWSARFDGATNVNGVLTLANSGVTAGTYAKVTVNAKGLVTGATGLVASDIPALDAGKITSGILPAARGGTGNGIGQAATAVKLVAPRTIYLGGDVSGSTTFDGSANAGITVTLANSGVNAGSYPKVTVNAKGLVTGGGGLTAADIPALDASKIATGRLDLERLPLVSQGLATAVHTSVDPNSVVIPLVLTNHANGPVAGRYYYIQTMFYPTVEGNATQIATGYAGVADMYVRYAYASPATTDSSKREWSAWVRCDLGGAFAHAPDGELGGYVNLDSMIASGWWHQPFTANAKNGANYPVGEAGLLTVHAPTASMIYQTYRGYAAGGLYWRCRYNGTWSAWYRAWDSGNFNPANYVAKSEYSWASLPGKPSNFPPSVHVHSAASRGVSGWYKNNDTGVIFQWVNLSIGDHPGGVIDRVVTFPIAFPNACLHVVPTVRENGRPAIPASTVTVAEKARTATNCTIVSSEYIGNVQNFGINVFAIGY

Physico‐chemical properties

protein length:	762 AA
molecular weight:	78642,69130 Da
isoelectric point:	8,35828
aromaticity:	0,08005
hydropathy:	0,08425

Domain architecture

BAA36247.1

1 762 aa

ATT 5–156 · STR 435–534 · STR 545–623 · RBD 661–762

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR051934
Unmapped

IPR051934 G3DSA:2.60.40.3940

IPR022225
ATT

IPR022225 cd19958 cd19958 IPR054075

cd19958
STR

cd19958 cd19958

BAA36247.1

1762 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1371
STR

DC_1371

BAA36247.1

1762 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR051934	Unmapped	-	2	652	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
IPR022225	ATT	DC_0271	5	156	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits
cd19958	STR	DC_0464	435	534	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
cd19958	STR	DC_0464	450	534	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
cd19958	STR	DC_0464	545	623	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
cd19958	STR	DC_0464	550	623	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
G3DSA:2.60.40.3940	RBD	G3DSA:2.60.40.3940	661	762	Merged direct domain	G3DSA:2.60.40.3940	C-terminal	Low	Positional only	77 proteins / 77 hits
IPR054075	RBD	DC_0717	673	762	InterPro cluster	Putative tail fiber protein gp53-like, C-terminal	C-terminal	Low	Positional only	174 proteins / 174 hits

Proteins with similar domain architecture

Phage

Pseudomonas phage phiCTX [NCBI] · taxon 2993857

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Pseudomonas aeruginosa [NCBI] · taxon 287

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales

Genbank protein accession

BAA36247.1 [NCBI]

Genbank nucleotide accession

AB008550 [NCBI]

CDS location

range 14130 -> 16418
strand +

CDS

ATGACGAGTCCCAAGTACGGCGGCCTGCTCACCGACATCGGCGCGGCAGCGCTGATCGCGGCGAGCGAGGCCGGGAAGAAGTGGCAGCCCACCCATATGCTCATCGGTGACGCCGGCGGCGCGCCCGGCGAGACGGCTGACCCCATCCCCTCGGCCGCTCAGACCAAGCTGATTCGCCAGCGCTACCGCGCTCAACTGAACCGTCTGTTCGTCTCCGAGCAAAGCGCAAACGTGCTGGTCGCCGAGCTGGTACTGCCGATGGCCATCGGTGGATTCTGGATACGGGAGATCGGCCTCGAGGACGCCGACGGGAAGTTCGTGGCGGTCGCCAACTGCCCGCCCAGCTTCAAGGCCAGCGTCGAGAGCGGGAGCGCGCGCACCCAGACCATCCGCGTGCAGATCATCCTATCCGGCATGGAGCACGTCGAACTGATCATCGACGACGGCATCGTCTACGCCACCCAGGACTGGGTGACGGCGAAGGTTGCCGCGGACTTCAAGGGACGCAAGGTGCTGGCCGGCAACGGCCTGGTCGGCGGTGGCGATTTGTCTGCGGATCGCACCATCGCCTTACCAGCCTCCGGCGTGGGTGCCGGCACCTACCGTGCGGTCACCGTCAACGCCAATGGCATCGTCACCGCCGGCAGCAACCCGACCACGCTGGGCGGCTACGGCATCACGGACGCACTGCATGCCAGCGAGGCGGTCACTACCCCGACGGCGAACAAGCTGCTCAGGCTGAACGCGGCCGGGCTACTACCGGCCTCGATTACGGGCAACGCAGCCACTGCCAGCCGGCTTGCAGCGCCCATCACGCTCAGCGCGAGCGGCGATGCAACGTGGTCAGCTCGGTTCGATGGGGCCACAAACGTCAACGGAGTCCTGACGCTGGCCAACTCCGGCGTCACCGCCGGGACCTACGCGAAAGTCACGGTGAACGCCAAAGGACTGGTTACCGGAGCCACTGGGCTTGTAGCGAGTGATATTCCGGCCCTTGATGCCGGAAAAATCACCTCCGGCATCTTACCTGCTGCCAGAGGCGGTACCGGCAATGGTATTGGTCAGGCTGCAACGGCGGTCAAACTCGTCGCCCCTCGTACGATCTACCTCGGTGGGGACGTCAGCGGCTCGACAACGTTCGACGGTAGCGCGAACGCTGGAATCACGGTCACGTTGGCGAACTCGGGTGTAAATGCCGGCTCCTACCCCAAAGTCACTGTTAACGCCAAGGGGCTGGTTACCGGTGGCGGTGGCCTGACGGCAGCAGACATTCCTGCGTTGGATGCGTCGAAGATTGCGACCGGTCGACTCGATCTTGAACGCTTGCCGTTGGTGTCGCAGGGACTGGCCACGGCAGTGCATACCAGCGTTGATCCCAACTCGGTGGTCATTCCGCTGGTACTGACCAATCACGCGAATGGCCCAGTGGCTGGCCGCTACTACTACATCCAGACGATGTTCTATCCGACCGTCGAAGGCAACGCGACGCAGATTGCAACCGGCTATGCCGGCGTGGCTGACATGTACGTTCGTTATGCCTACGCTTCCCCCGCAACGACCGATTCGTCCAAGCGGGAGTGGTCAGCCTGGGTCCGCTGCGATCTGGGCGGTGCCTTCGCACACGCGCCCGATGGCGAGCTGGGTGGCTATGTCAATCTGGACTCGATGATTGCTTCGGGCTGGTGGCATCAACCGTTCACCGCAAACGCCAAGAACGGGGCGAACTATCCCGTAGGCGAAGCAGGTTTATTGACGGTTCATGCTCCAACCGCCTCGATGATCTATCAGACCTATCGTGGCTACGCCGCCGGCGGTCTGTACTGGCGCTGCCGCTACAACGGAACATGGTCAGCTTGGTATCGTGCATGGGACTCCGGCAACTTCAACCCGGCCAACTATGTGGCCAAGTCGGAATACTCCTGGGCGTCCTTGCCTGGGAAGCCATCGAATTTCCCACCCAGCGTGCACGTTCACTCTGCAGCGAGCAGGGGCGTGAGCGGGTGGTACAAGAACAACGATACGGGGGTGATATTTCAGTGGGTGAACCTGTCTATCGGTGACCACCCTGGGGGAGTTATCGATCGGGTCGTGACGTTCCCCATTGCCTTCCCGAATGCCTGTCTACATGTCGTTCCAACTGTTAGAGAAAACGGCCGTCCTGCCATTCCCGCCTCAACTGTAACGGTTGCAGAAAAAGCCAGAACGGCGACCAACTGCACCATCGTTTCAAGTGAGTACATCGGGAATGTGCAGAACTTCGGCATCAATGTTTTCGCAATTGGCTATTGA

Title	Authors	Date	PMID	Source
Pseudomonas aeruginosa cytotoxin: the nucleotide sequence of the gene and the mechanism of activation of the protoxin	Hayashi,T., Kamio,Y., Hishinuma,F., Usami,Y., Titani,K. and Terawaki,Y.	1989	2507866	GenBank
Molecular analysis of a cytotoxin-converting phage, phi CTX, of Pseudomonas aeruginosa: structure of the attP-cos-ctx region and integration into the serine tRNA gene	Hayashi,T., Matsumoto,H., Ohnishi,M. and Terawaki,Y.	1993	8469112	GenBank
The complete nucleotide sequence of phi CTX, a cytotoxin-converting phage of Pseudomonas aeruginosa: implications for phage evolution and horizontal gene transfer via bacteriophages	Nakayama,K., Kanaya,S., Ohnishi,M., Terawaki,Y. and Hayashi,T.	1999	10027959	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature