Protein

View in Explore
Genbank accession
YP_010356983.1 [GenBank]
Protein name
pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,90
Protein sequence
MKKTLLILAILATALVSAQKDTTKLVIPTPSNVKDYFNTQTGEDRIDGTAIKNIVADSIKTGTLSEDRLPTTALKTSNVIDNLTSTTIDAPLSANAGKTLKDNLDLKASNEDVEARVKPITLAEYNAMDAATKLNNIGRQIIDPTGVPNSVTLADGSVSTTKIANSAVSEAKLDAAVLTKLDKADTALQEVVNGSITDAKINTDTYRKLYYAVPDGYISPRDYGAVMDGVTDDRDAFAATLAEANTLSKRVYVDSDMFLDVEETGTKSIFIADNTWIEGRDKDVNIITNNNLSPAFQIALTENITIKNITFLHDNTYDATTNTADLTINKTANIAQLKSYLETNKDIVFGSNSPRWSGPTAYRAYFLFSGGNNVLFDNVTIKAKGETADTFVVWAVKFKEEFSENQTVVDDNSPSSIPKDIRFNNLTLDGVLMGIQGIVNDFSANETKSYRYSDMQTLAGTHIGGNVGDNTYFFAPPHLFYLTKDNSSQYDCDNIKITNTIDYGVYVGSENVRATSSGYCNSLKLVGVSSNIYVDNYSSFRRDGLGDIGEVSNSVFKNIYAEGYSDIFDPSFAFNSFRFTGTLNNVLFENVIVKDLADIAEIYPMDYAIGDYVTYNNVNMHVNDLNTANDGTFSIWGSNNTIKNSELNIKNHLSTTTFKGVVFSNTRSTDANNNYNLTINGWRTIDANPTGLISRMLFSSGSNTNKNYAKIIDTNNNAIIEQVNEINTETWTRSEIVDLTSQSGSSILINTRVISGYGIKSAKVVVLSSLDSGVTATLYSGALSEHTLVSNISNSANSINVSNFDPISDEEAVDSRVYLKTSTANFANTGSVKVTLELYRKTLN
Physico‐chemical
properties
protein length:844 AA
molecular weight: 92060,12870 Da
isoelectric point:4,73835
aromaticity:0,08531
hydropathy:-0,25782

Domains

View on InterPro
Domain architecture
YP_010356983.1
1 844 aa
STR 211–434 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_010356983.1
1 844 aa
Domain Start End Length (AA) Confidence
N-terminal 1 232 232 0,9577
Central domain 233 716 485 0,9889
C-terminal 717 844 127 0,9716
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Cellulophaga phage Ingeline_1 [NCBI] · taxon 2745674
Uroviricota Caudoviricetes Duneviridae Ingelinevirus ingeline
Host
Cellulophaga sp. HaHaR_3_176 [NCBI] · taxon 1942464
Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga

Coding sequence (CDS)

Genbank protein accession
YP_010356983.1 [NCBI]
Genbank nucleotide accession
NC_062749 [NCBI]
CDS location
range 25701 -> 28235
strand +
CDS
ATGAAAAAAACACTTTTAATATTAGCAATTTTAGCAACAGCATTAGTATCAGCACAAAAAGATACTACAAAACTAGTAATCCCTACACCTAGTAATGTAAAGGATTATTTTAACACGCAAACAGGTGAAGATAGAATAGATGGTACTGCTATAAAAAACATTGTAGCAGATAGTATAAAAACAGGTACTTTATCAGAAGATAGACTACCAACAACAGCTTTAAAAACATCTAATGTAATAGACAACTTAACATCTACAACAATAGATGCACCATTAAGTGCTAATGCAGGTAAAACCTTAAAAGACAACTTAGATTTAAAAGCTAGTAATGAAGATGTAGAAGCGAGGGTTAAGCCTATAACATTAGCGGAATACAACGCAATGGATGCAGCTACTAAGTTAAATAATATAGGACGTCAAATTATAGACCCTACAGGCGTTCCAAATTCTGTAACATTAGCAGATGGTAGTGTTAGTACTACTAAAATTGCTAATAGTGCTGTGAGTGAAGCTAAGTTAGATGCAGCTGTACTTACTAAACTAGATAAAGCAGATACCGCATTGCAAGAGGTGGTTAATGGTAGTATAACAGATGCAAAAATAAATACGGATACATACAGAAAACTATATTACGCTGTACCTGATGGTTATATTTCACCTAGAGATTATGGCGCTGTAATGGATGGTGTAACGGATGATAGGGATGCTTTTGCGGCTACCTTAGCCGAAGCAAATACTTTAAGCAAGCGTGTTTATGTTGATAGTGATATGTTTTTAGATGTAGAAGAAACAGGAACTAAATCGATATTTATAGCAGATAATACATGGATAGAAGGACGTGATAAAGATGTTAATATTATAACTAATAACAACCTTTCTCCAGCTTTTCAAATAGCATTGACGGAAAACATAACAATAAAAAACATTACTTTTTTACATGACAATACTTACGATGCTACAACTAATACTGCTGATTTAACCATAAATAAAACTGCAAACATTGCACAGTTAAAAAGTTATTTAGAAACTAATAAAGATATTGTTTTTGGTTCAAATTCACCTAGATGGAGTGGACCAACAGCATATAGAGCTTATTTTTTATTTTCAGGAGGTAATAATGTTCTGTTTGATAATGTTACTATAAAAGCAAAAGGAGAAACCGCAGATACTTTTGTTGTTTGGGCTGTAAAATTTAAAGAAGAGTTTTCTGAAAATCAAACAGTAGTAGACGATAACAGTCCATCATCAATACCTAAAGATATAAGATTTAATAATTTAACTTTAGATGGGGTATTAATGGGTATTCAAGGCATTGTTAATGATTTTTCAGCAAATGAAACAAAGTCTTACCGATATTCTGATATGCAAACTTTAGCAGGTACACACATAGGTGGAAATGTAGGAGATAATACATATTTCTTTGCACCGCCACACTTGTTTTACCTAACAAAAGATAACTCATCACAGTATGATTGTGATAATATAAAAATAACAAATACAATTGATTACGGAGTTTATGTAGGAAGTGAAAATGTAAGAGCTACGTCTAGTGGATATTGTAATAGTTTAAAATTGGTAGGAGTTTCCAGTAATATTTATGTAGATAATTATTCTAGCTTTAGAAGGGATGGTTTAGGAGATATTGGTGAAGTGAGTAATAGTGTATTTAAAAACATTTACGCAGAGGGTTATTCTGATATATTCGACCCATCTTTTGCATTTAACTCTTTTAGATTTACAGGCACACTTAACAATGTTTTATTTGAAAATGTAATTGTTAAAGATTTAGCAGATATCGCTGAAATATATCCTATGGATTATGCTATTGGTGATTATGTTACTTATAATAATGTTAATATGCACGTTAACGACTTAAACACAGCTAATGATGGTACTTTTTCTATTTGGGGTTCTAATAATACAATTAAAAATTCAGAATTAAATATAAAAAACCACTTATCAACAACAACATTTAAGGGTGTTGTTTTTTCAAATACTAGGTCTACGGATGCTAACAATAATTATAATTTAACCATCAATGGATGGCGGACAATAGACGCTAATCCAACAGGTTTAATTTCAAGAATGTTGTTTTCTTCAGGAAGTAATACAAATAAAAATTACGCAAAAATAATTGACACAAACAACAATGCTATAATAGAGCAAGTAAACGAAATAAATACAGAAACTTGGACTAGAAGCGAAATTGTTGATTTAACATCTCAATCGGGTTCTAGCATATTAATAAATACTAGGGTTATATCTGGATATGGTATTAAATCTGCTAAAGTTGTAGTACTATCTTCTTTAGACTCAGGCGTAACAGCTACTTTATATAGTGGAGCTTTAAGTGAGCATACCCTTGTAAGCAATATAAGTAATTCAGCAAACAGTATTAATGTAAGTAATTTCGACCCTATCTCAGATGAAGAGGCTGTTGATTCAAGGGTTTATCTTAAAACAAGTACAGCAAATTTCGCTAATACAGGAAGTGTTAAGGTGACACTAGAATTATACAGAAAAACTTTAAATTAA

Genome Context

Tertiary structure

YP_010356983.1
ColabFold structure
Source ColabFold
pLDDT 30.8
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Highly diverse flavobacterial phages as mortality factor during North Sea spring blooms Bartlau,N., Wichels,A., Krohne,G., Adriaenssens,E.M., Heins,A., Fuchs,B.M., Amann,R. and Moraru,C. 2021 — GenBank