Protein

View in Explore
Genbank accession
YP_010356983.1 [GenBank]
Protein name
pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,91
Protein sequence
MKKTLLILAILATALVSAQKDTTKLVIPTPSNVKDYFNTQTGEDRIDGTAIKNIVADSIKTGTLSEDRLPTTALKTSNVIDNLTSTTIDAPLSANAGKTLKDNLDLKASNEDVEARVKPITLAEYNAMDAATKLNNIGRQIIDPTGVPNSVTLADGSVSTTKIANSAVSEAKLDAAVLTKLDKADTALQEVVNGSITDAKINTDTYRKLYYAVPDGYISPRDYGAVMDGVTDDRDAFAATLAEANTLSKRVYVDSDMFLDVEETGTKSIFIADNTWIEGRDKDVNIITNNNLSPAFQIALTENITIKNITFLHDNTYDATTNTADLTINKTANIAQLKSYLETNKDIVFGSNSPRWSGPTAYRAYFLFSGGNNVLFDNVTIKAKGETADTFVVWAVKFKEEFSENQTVVDDNSPSSIPKDIRFNNLTLDGVLMGIQGIVNDFSANETKSYRYSDMQTLAGTHIGGNVGDNTYFFAPPHLFYLTKDNSSQYDCDNIKITNTIDYGVYVGSENVRATSSGYCNSLKLVGVSSNIYVDNYSSFRRDGLGDIGEVSNSVFKNIYAEGYSDIFDPSFAFNSFRFTGTLNNVLFENVIVKDLADIAEIYPMDYAIGDYVTYNNVNMHVNDLNTANDGTFSIWGSNNTIKNSELNIKNHLSTTTFKGVVFSNTRSTDANNNYNLTINGWRTIDANPTGLISRMLFSSGSNTNKNYAKIIDTNNNAIIEQVNEINTETWTRSEIVDLTSQSGSSILINTRVISGYGIKSAKVVVLSSLDSGVTATLYSGALSEHTLVSNISNSANSINVSNFDPISDEEAVDSRVYLKTSTANFANTGSVKVTLELYRKTLN
Physico‐chemical
properties
protein length:844 AA
molecular weight: 92060,12870 Da
isoelectric point:4,73835
aromaticity:0,08531
hydropathy:-0,25782

Domains

Domains [InterPro]
DC_1936
STR
9–215
DC_1936 DC_0685 DC_0969
IPR012334
STR
211–433
IPR012334
IPR011050
STR
216–434
IPR011050
YP_010356983.1
1 844
Architecture
STR
RBD
STR 9-434 | RBD 475-844
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010356983.1
1 844
Domain Start End Length (AA) Confidence
N-terminal 1 232 232 0,9577
Central domain 233 716 485 0,9889
C-terminal 717 844 127 0,9716
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-232
Central
233-716
C-terminal
717-844

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage Ingeline_1
[NCBI] 		2745674 Uroviricota > Caudoviricetes > Duneviridae > Ingelinevirus ingeline >
Host Cellulophaga sp. HaHaR_3_176
[NCBI] 		1942464 Bacteroidota > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Cellulophaga >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010356983.1 [NCBI]
Genbank nucleotide accession
NC_062749 [NCBI]
CDS location
range 25701 -> 28235
strand +
CDS
ATGAAAAAAACACTTTTAATATTAGCAATTTTAGCAACAGCATTAGTATCAGCACAAAAAGATACTACAAAACTAGTAATCCCTACACCTAGTAATGTAAAGGATTATTTTAACACGCAAACAGGTGAAGATAGAATAGATGGTACTGCTATAAAAAACATTGTAGCAGATAGTATAAAAACAGGTACTTTATCAGAAGATAGACTACCAACAACAGCTTTAAAAACATCTAATGTAATAGACAACTTAACATCTACAACAATAGATGCACCATTAAGTGCTAATGCAGGTAAAACCTTAAAAGACAACTTAGATTTAAAAGCTAGTAATGAAGATGTAGAAGCGAGGGTTAAGCCTATAACATTAGCGGAATACAACGCAATGGATGCAGCTACTAAGTTAAATAATATAGGACGTCAAATTATAGACCCTACAGGCGTTCCAAATTCTGTAACATTAGCAGATGGTAGTGTTAGTACTACTAAAATTGCTAATAGTGCTGTGAGTGAAGCTAAGTTAGATGCAGCTGTACTTACTAAACTAGATAAAGCAGATACCGCATTGCAAGAGGTGGTTAATGGTAGTATAACAGATGCAAAAATAAATACGGATACATACAGAAAACTATATTACGCTGTACCTGATGGTTATATTTCACCTAGAGATTATGGCGCTGTAATGGATGGTGTAACGGATGATAGGGATGCTTTTGCGGCTACCTTAGCCGAAGCAAATACTTTAAGCAAGCGTGTTTATGTTGATAGTGATATGTTTTTAGATGTAGAAGAAACAGGAACTAAATCGATATTTATAGCAGATAATACATGGATAGAAGGACGTGATAAAGATGTTAATATTATAACTAATAACAACCTTTCTCCAGCTTTTCAAATAGCATTGACGGAAAACATAACAATAAAAAACATTACTTTTTTACATGACAATACTTACGATGCTACAACTAATACTGCTGATTTAACCATAAATAAAACTGCAAACATTGCACAGTTAAAAAGTTATTTAGAAACTAATAAAGATATTGTTTTTGGTTCAAATTCACCTAGATGGAGTGGACCAACAGCATATAGAGCTTATTTTTTATTTTCAGGAGGTAATAATGTTCTGTTTGATAATGTTACTATAAAAGCAAAAGGAGAAACCGCAGATACTTTTGTTGTTTGGGCTGTAAAATTTAAAGAAGAGTTTTCTGAAAATCAAACAGTAGTAGACGATAACAGTCCATCATCAATACCTAAAGATATAAGATTTAATAATTTAACTTTAGATGGGGTATTAATGGGTATTCAAGGCATTGTTAATGATTTTTCAGCAAATGAAACAAAGTCTTACCGATATTCTGATATGCAAACTTTAGCAGGTACACACATAGGTGGAAATGTAGGAGATAATACATATTTCTTTGCACCGCCACACTTGTTTTACCTAACAAAAGATAACTCATCACAGTATGATTGTGATAATATAAAAATAACAAATACAATTGATTACGGAGTTTATGTAGGAAGTGAAAATGTAAGAGCTACGTCTAGTGGATATTGTAATAGTTTAAAATTGGTAGGAGTTTCCAGTAATATTTATGTAGATAATTATTCTAGCTTTAGAAGGGATGGTTTAGGAGATATTGGTGAAGTGAGTAATAGTGTATTTAAAAACATTTACGCAGAGGGTTATTCTGATATATTCGACCCATCTTTTGCATTTAACTCTTTTAGATTTACAGGCACACTTAACAATGTTTTATTTGAAAATGTAATTGTTAAAGATTTAGCAGATATCGCTGAAATATATCCTATGGATTATGCTATTGGTGATTATGTTACTTATAATAATGTTAATATGCACGTTAACGACTTAAACACAGCTAATGATGGTACTTTTTCTATTTGGGGTTCTAATAATACAATTAAAAATTCAGAATTAAATATAAAAAACCACTTATCAACAACAACATTTAAGGGTGTTGTTTTTTCAAATACTAGGTCTACGGATGCTAACAATAATTATAATTTAACCATCAATGGATGGCGGACAATAGACGCTAATCCAACAGGTTTAATTTCAAGAATGTTGTTTTCTTCAGGAAGTAATACAAATAAAAATTACGCAAAAATAATTGACACAAACAACAATGCTATAATAGAGCAAGTAAACGAAATAAATACAGAAACTTGGACTAGAAGCGAAATTGTTGATTTAACATCTCAATCGGGTTCTAGCATATTAATAAATACTAGGGTTATATCTGGATATGGTATTAAATCTGCTAAAGTTGTAGTACTATCTTCTTTAGACTCAGGCGTAACAGCTACTTTATATAGTGGAGCTTTAAGTGAGCATACCCTTGTAAGCAATATAAGTAATTCAGCAAACAGTATTAATGTAAGTAATTTCGACCCTATCTCAGATGAAGAGGCTGTTGATTCAAGGGTTTATCTTAAAACAAGTACAGCAAATTTCGCTAATACAGGAAGTGTTAAGGTGACACTAGAATTATACAGAAAAACTTTAAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bc0bb603ad2ca727c73a9d25c6203a57ec95ee5dabbc6d73a47756e5e7ffea27
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3079
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Highly diverse flavobacterial phages as mortality factor during North Sea spring blooms Bartlau,N., Wichels,A., Krohne,G., Adriaenssens,E.M., Heins,A., Fuchs,B.M., Amann,R. and Moraru,C. 2021 — GenBank