Protein

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Genbank accession
AUR93207.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATQVKHRRGTNAEILAGTPAIGELWFNTTDNTIHMGDGITQGGVKHLNVDIASFVYVETLGVKFDGATDNTLAIQAVFDKYPAGMTFVFSSGQCLTDRVFPKSNTTIIFNSKTEMVGVTNGNNIIRLSDVDNIHLIGNGCKWTRDETGTSHNLYLESARNIVIENINFESAGAAKDCIYVGEGGAGPSENVVIRGGSTANANRNGISIVACNNVLIDNVKICDTTGSPGAGIDIEANNFDKVAYVTIRKCNIYNNATAGIFSVFGEKVTIEDNWIHDNGAYGIGCSAGGAQFEDDVYRNQDRRGVTSFSATGEVGIPFSSQDDTVLSLPVGTIVQFVTKNGAELPTELRIKTRWVVSEHSVSNNSCKLAPYLDVGQINSYTQDFSGSLNSDPTLSDIEVLCFVPGQNSDYIIQGNHVENNGLVQTSVAEIFFTTGVNVFIKDNFVKIADRVASGIQTQYTRYTEVTGNTVEPYNGANATNAIGLNYGQCSYVNSTSNRVINLRSYGVTIDGGSKSRFYGDEVHNCGITNNYPVRIRNTNGALIDGYVVTQNIKNTPTNGIVADTNVSNTIFQRCNVKDAGVDNASSLNVIGASNILVNNVLHDGVLTS
Physico‐chemical
properties
protein length:609 AA
molecular weight: 65372,81410 Da
isoelectric point:4,99913
aromaticity:0,07882
hydropathy:-0,16092

Domains

Domains [InterPro]
G3DSA:2.10.10.30
ATT
1–54
G3DSA:2.10.10.30 IPR012334 DC_1409
G3DSA:2.10.10.30
ATT
1–45
G3DSA:2.10.10.30 IPR012334 IPR006626 IPR006626
IPR041352
ATT
5–41
IPR041352 IPR011050
IPR039448
ENZ
144–292
IPR039448
IPR006626
Unmapped
159–183
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
AUR93207.1
1 609
Architecture
ATT
STR
RBD
ATT 1-54 | STR 55-328 | RBD 338-609
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR93207.1
1 609
Domain Start End Length (AA) Confidence
N-terminal 1 71 71 0,9812
Central domain 72 322 252 0,9792
C-terminal 323 609 286 0,1656
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-71
Central
72-322
C-terminal
323-609

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.185.O._10N.286.49.C2
[NCBI] 		1881392 No lineage information
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR93207.1 [NCBI]
Genbank nucleotide accession
MG592551.1 [NCBI]
CDS location
range 22759 -> 24588
strand +
CDS
ATGGCTACACAAGTAAAACACAGACGTGGTACTAATGCTGAAATATTAGCAGGTACACCGGCTATTGGTGAACTGTGGTTCAATACAACGGATAATACTATTCACATGGGTGATGGTATTACACAAGGAGGGGTTAAACACCTTAATGTTGACATCGCATCTTTTGTGTATGTCGAAACATTAGGTGTAAAATTCGATGGAGCAACCGATAATACGTTAGCAATACAAGCTGTATTTGATAAATACCCAGCAGGTATGACATTTGTATTTTCATCGGGGCAGTGTCTAACAGATAGGGTGTTCCCTAAAAGTAACACCACCATAATATTCAATTCCAAAACGGAGATGGTGGGTGTTACTAACGGTAACAACATCATACGACTGTCGGATGTAGATAACATTCATTTGATTGGTAACGGGTGTAAATGGACTCGTGATGAGACTGGTACTTCTCACAATCTATACCTTGAAAGCGCAAGAAATATAGTGATAGAAAACATCAATTTTGAAAGTGCTGGCGCAGCAAAGGACTGTATATATGTAGGGGAGGGCGGTGCAGGCCCCTCTGAAAATGTAGTGATCCGTGGTGGCTCAACCGCAAACGCAAACCGCAACGGCATATCTATTGTGGCATGTAACAACGTGCTGATAGATAATGTTAAAATCTGCGACACAACTGGATCACCAGGAGCAGGCATCGATATTGAAGCTAATAATTTCGATAAAGTAGCTTACGTTACAATCCGAAAATGTAATATTTACAACAATGCAACTGCTGGTATTTTTTCAGTGTTCGGTGAAAAAGTTACAATAGAAGATAACTGGATACATGATAATGGTGCCTACGGTATCGGCTGCTCTGCTGGTGGGGCGCAGTTTGAAGATGACGTATACCGTAATCAAGACAGACGTGGTGTAACTTCTTTTTCGGCTACGGGTGAGGTGGGTATACCCTTTTCTAGTCAGGATGACACTGTGTTGTCGTTACCCGTAGGAACGATTGTGCAGTTTGTTACTAAGAACGGTGCGGAACTTCCGACGGAGCTAAGAATCAAAACACGATGGGTTGTTTCAGAACATTCAGTGAGTAACAACTCGTGCAAGCTCGCACCGTATTTGGATGTAGGCCAAATAAACTCATACACACAAGACTTTTCTGGAAGCTTGAACTCAGACCCTACGCTATCAGACATCGAAGTGTTGTGCTTTGTGCCTGGGCAAAACAGTGACTACATCATCCAGGGTAATCATGTTGAAAATAACGGACTTGTACAAACATCTGTTGCTGAAATATTTTTCACGACAGGTGTGAATGTATTCATAAAGGATAATTTTGTTAAGATTGCAGACAGGGTTGCATCGGGTATTCAAACTCAATATACAAGGTACACAGAAGTAACAGGTAACACCGTCGAACCTTACAATGGTGCGAATGCAACCAACGCCATAGGGTTAAATTACGGTCAATGTTCTTATGTCAACTCGACATCAAACAGAGTAATCAACCTTAGAAGTTATGGTGTCACAATTGACGGTGGTTCTAAGTCTCGTTTTTACGGTGACGAAGTTCACAACTGTGGTATTACCAATAATTACCCTGTACGCATTCGGAATACTAACGGCGCATTGATTGACGGTTACGTTGTTACTCAAAATATCAAAAACACACCTACTAATGGGATTGTTGCAGACACCAATGTGTCTAACACCATATTCCAGCGATGTAATGTCAAAGACGCAGGTGTTGATAACGCATCATCATTGAATGTGATTGGTGCAAGTAATATTTTAGTTAATAACGTTTTACATGATGGTGTTTTGACAAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6974903ef380870a266b693b4b11012ced07833bef32a74581f7a9c759080897
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8261
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank