Phage RBP Database

Genbank accession

AMB18632.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,99

Protein sequence

MSNLFRDNLYESFPDPNKQIEELEDQVVNVVDQASNAASDLAQRAVNILYPPPPLVAPKGDGVTDDRLAIQAIIDSGVAAIYVPDRTFLVSHNGQTYTGKGTGVGLKLRSNLRIYGVGTIKYKGGQAGNLAVMSSITDTIENCHIEGVTIDGNKANLNAGASVSNAVMFGAKNCSYINVKSIDASYCGLMFRGAGTENNIIERCNVTNSSYIGIQCQNHNIVKILHNTVRDSGDNGIDIEGNDSAGGLLNRGYGKQIIIQGNVVNNANSGIFIESAGEVIVNSNHVYNTNVGAFINRINSGSYMNGITSNHFINMPWQSGVAYKAGDRIVTGSKLYECTVAGTASVAPSHTSGTASDGTLTWKWLRTFPSNYGMRFNNNVGDGQVVGNQIRGFLYGVRCVSAASYLTFDANYFSDIEKYLFAPATAANSFIKSQIGVNYYKGSQTGGFPKTMAPTTESPSYSSRVLNVGIKPALSLETNAVLRDTFYYKTGNTDSTRSGWGGAYAIFNSGETKVYIPGAGLVVGEYVKINGTFYYVQANSSSEITIRTADTKAAGDFTATVNGNYSVQVYSAGEYTALIAD

Physico‐chemical properties

protein length:	581 AA
molecular weight:	62091,46000 Da
isoelectric point:	6,20354
aromaticity:	0,09639
hydropathy:	-0,17315

Domain architecture

AMB18632.1

1 581 aa

STR 42–416 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

Coil
Unmapped

Coil IPR011050

IPR012334
STR

IPR012334 IPR006626

IPR012334
STR

IPR012334

IPR006626
Unmapped

IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 cd12214

AMB18632.1

1581 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0517
RBD

DC_0517

AMB18632.1

1581 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
Coil	Unmapped	-	20	40	Coils	Coil	-	-	-	-
IPR011050	STR	IPR011050	42	416	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	55	347	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR012334	STR	IPR012334	58	347	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR006626	Unmapped	-	140	165	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	196	218	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	219	241	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	254	275	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	276	297	InterPro	Parallel beta-helix repeat	-	-	-	-
cd12214	CBM	DC_0028	316	346	InterPro cluster	ChiA1_BD	C-terminal	High	Text match	29 proteins / 44 hits
IPR006626	Unmapped	-	380	401	InterPro	Parallel beta-helix repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AMB18632.1

1 581 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	67	67	0,9643
Central domain	68	313	247	0,9928
C-terminal	314	581	267	0,5454

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Bacillus phage Eldridge [NCBI] · taxon 1776293

Uroviricota Caudoviricetes Herelleviridae Eldridgevirus Eldridgevirus eldridge

Host

Bacillus megaterium [NCBI] · taxon 1404

cellular organisms Bacteria Bacillati Bacillota Bacilli Bacillales

No CDS data available.

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)