Protein

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Genbank accession
ALO80452.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MEYFVDGNITSSGDGLTELNAFKTIQEGIDAAYAGDTVWVKAAKYVGGENSTTRSGTSSNPIKIIGYLNTVGDIVSTQGPTYTKAMFDADSSIIDGGITVLDSSDMPLIEGIRVNEDPDDARAFTINHSFIQFENLKIQYYQMGFIAPSGNSYDGLLFKNIIMNELGNWDASNPGWDLPFSAAPPAGNLSGQGFYLIDTNNTIILNSSVYDAGAAAYFPIRADNLLIDYCEAYSTRTGNASDYLFDFVTVTNSTLSNYYAYREDLDTSKMHLSRAVMLQLQSNDNTIMNGTHVNLRTQLEVQSSRNVLKNINVIGNGQANQGNIQISGESNDNIFLDWTIDGTEGIQFLGANDTRQPGVSHVYSGNNNYFINFVITNVPVGTGNAIFSYHRLGFSDPDDGGTNYVIGLTADNCITLVNTNRTGTLHIYNSTFSNITNYDTFSTSGTATDELVNLNFYNCNFYNNGFVTPTNNVERTLVNTTALNPMFNPDYTLQEASPLRDIGMDASTINSLAATDYIGTARPQNGSYDIGAYEYSIATGIPNTDGTGSVDDTISLQAWLDSGSTTKPLGNEIYLVSGTLDIDQSGAQEVDFNGATIIVSSYADRYAIDIDKPDRSLTTLKNLTIDGKDLQRNGVRVDSPIYAENVNLLDFYSPTQSIVGWLLDINLTNYGDFTWKNCDVTKMYSEYNSIIGDGLGSARAYDIQVNAMPPDTFTVLIEDFVWDGFYGDDGGPIRVDDNTSENMSVTNNSVTLRNGSVTAFTRRGIKMAMDNITIDNVFYKSITTSNPYYQYAEPAGLIGARPLDTDPNGLLDNIVIKNCTFDGSGNYPWALIDKANTKWSNNTFINGAGIRIGNNSNSEVGDVVICGSNFGTGSKIHQQLDTVSNAPGTNIIIDSNNIADANYLEFTTLSYTVQEVLDCLGNVIIPIPLLANRNQNLIYWRI
Physico‐chemical
properties
protein length:942 AA
molecular weight: 102817,17490 Da
isoelectric point:4,20162
aromaticity:0,10191
hydropathy:-0,24862

Domains

Domains [InterPro]
IPR012334
STR
1–294
IPR012334 IPR059226 IPR012334
IPR011050
STR
2–294
IPR011050 IPR011050
IPR011050
STR
281–535
IPR011050
ALO80452.1
1 942
Architecture
STR
STR
STR 1-535 | STR 544-925 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ALO80452.1
1 942
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,8798
Central domain 17 493 478 0,9900
C-terminal 494 942 448 0,0310
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-493
C-terminal
494-942

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage phi17:2_18
[NCBI] 		1747283 Uroviricota > Caudoviricetes > Lightbulbvirus >
Host Cellulophaga baltica
[NCBI] 		76594 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALO80452.1 [NCBI]
Genbank nucleotide accession
KT962247 [NCBI]
CDS location
range 55210 -> 58038
strand -
CDS
ATGGAATACTTTGTAGATGGAAATATTACTTCTTCTGGGGATGGTCTAACAGAACTTAACGCATTTAAAACTATCCAAGAAGGTATTGATGCTGCATATGCAGGAGATACTGTTTGGGTAAAGGCAGCTAAATATGTTGGTGGAGAAAACTCAACAACTAGGAGTGGGACATCTTCAAATCCAATTAAAATTATTGGGTATTTGAATACTGTTGGAGATATAGTAAGTACTCAAGGACCTACATATACTAAAGCTATGTTCGATGCTGATAGCTCTATAATAGATGGAGGCATAACTGTTTTAGATAGCTCAGACATGCCACTAATAGAAGGTATTAGGGTTAATGAAGATCCTGATGATGCCAGAGCTTTTACAATAAATCATAGTTTCATTCAGTTTGAGAATCTTAAAATACAATACTATCAAATGGGATTTATTGCTCCATCTGGAAATAGTTATGATGGACTATTATTCAAGAACATTATAATGAATGAACTTGGTAATTGGGATGCTAGTAATCCTGGATGGGACTTACCTTTCTCAGCAGCTCCTCCAGCAGGTAACTTATCAGGTCAAGGTTTTTATTTAATTGACACTAACAATACAATTATACTAAACTCATCTGTGTATGACGCAGGAGCAGCAGCTTATTTCCCTATAAGGGCTGATAATTTATTAATAGATTACTGTGAGGCTTATAGTACAAGAACAGGGAATGCTTCTGATTATTTATTTGATTTTGTTACAGTTACTAACTCTACATTAAGTAATTACTACGCATACAGAGAAGATTTAGATACATCTAAAATGCATTTATCTAGAGCTGTAATGTTGCAGTTGCAGTCTAACGATAACACTATAATGAACGGTACTCATGTCAATTTGAGAACTCAATTAGAAGTACAATCAAGTAGGAATGTTTTAAAGAATATAAATGTAATTGGTAACGGACAAGCTAATCAGGGCAATATACAGATCAGCGGAGAATCTAATGATAACATATTTTTAGATTGGACTATAGATGGTACAGAAGGCATACAGTTTTTAGGAGCTAATGATACTAGGCAACCAGGAGTTAGCCATGTGTATTCAGGTAATAATAACTATTTTATAAATTTTGTTATAACTAATGTACCTGTGGGTACAGGTAATGCTATATTTTCATACCATAGATTAGGGTTTTCTGATCCTGATGATGGTGGAACAAATTACGTTATAGGTTTAACGGCTGATAATTGTATTACATTAGTAAACACAAATAGAACTGGAACATTGCATATTTATAATAGTACATTTAGTAATATCACTAACTATGATACTTTTAGTACAAGTGGTACGGCAACAGATGAACTAGTTAATTTAAACTTCTATAACTGTAATTTTTACAATAATGGATTTGTAACACCTACTAATAATGTAGAAAGAACTCTAGTTAACACTACAGCTTTAAATCCTATGTTTAACCCTGACTACACTTTGCAAGAAGCTAGTCCATTAAGGGATATAGGAATGGACGCTAGTACTATAAATTCTTTAGCTGCTACTGATTATATAGGTACCGCTAGACCTCAAAATGGAAGTTATGATATAGGAGCTTACGAATACTCTATTGCCACAGGTATACCAAACACTGATGGTACTGGAAGTGTAGATGATACAATCTCACTGCAAGCATGGTTAGATAGTGGCAGCACAACTAAACCTTTAGGTAATGAGATATATTTAGTTTCAGGGACTTTAGATATAGATCAAAGTGGAGCGCAAGAAGTGGATTTTAATGGAGCCACTATAATAGTAAGTTCTTATGCAGATAGGTATGCAATTGATATAGACAAGCCAGATAGAAGTTTAACCACTCTTAAGAACTTAACAATAGATGGAAAAGATCTACAAAGAAATGGTGTTAGAGTTGATTCTCCTATTTATGCAGAAAATGTAAATTTACTAGATTTTTATTCTCCAACTCAAAGTATTGTAGGTTGGTTATTAGATATAAATCTAACTAACTATGGAGACTTTACATGGAAGAACTGTGATGTAACTAAAATGTATAGTGAGTATAATTCAATTATAGGAGACGGACTAGGATCTGCTAGAGCTTACGATATTCAAGTTAACGCCATGCCTCCAGATACTTTTACCGTATTAATAGAGGATTTTGTATGGGATGGTTTTTATGGCGATGATGGAGGACCTATTAGAGTAGACGATAATACAAGCGAGAATATGTCTGTTACAAATAACTCAGTGACATTAAGAAACGGAAGTGTAACAGCTTTTACTAGAAGAGGTATTAAAATGGCAATGGATAATATAACTATTGACAACGTTTTTTATAAATCAATTACAACATCAAATCCTTATTATCAGTATGCCGAACCAGCTGGCTTAATTGGAGCTAGGCCACTTGACACTGATCCAAATGGGCTTCTTGATAATATAGTTATTAAAAACTGTACATTTGATGGAAGCGGAAATTATCCTTGGGCTTTAATTGATAAAGCAAATACTAAATGGAGCAACAATACTTTTATAAACGGGGCAGGAATAAGGATTGGAAATAATAGCAACTCAGAAGTTGGTGATGTAGTTATTTGTGGAAGTAATTTTGGAACAGGATCTAAAATACATCAACAATTAGATACAGTTTCTAATGCTCCTGGAACTAACATAATTATAGATAGCAATAACATTGCTGATGCTAATTATTTAGAATTTACAACACTTTCTTATACAGTACAAGAAGTTTTAGATTGCTTAGGTAATGTGATTATTCCAATACCTTTATTGGCAAACAGAAATCAGAATTTAATATACTGGAGAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8c6b9dc24a05822cfaf67b5e02dbdc48cb59c1d809f430f7c12d57473ad020c0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7510
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Large-scale maps of variable infection efficiencies in aquatic Bacteriodetes phage-host model systems Holmfeldt,K., Solonenko,N., Howard-Varona,C., Moreno,M., Malmstrom,R.R., Blow,M.J. and Sullivan,M.B. 2016-06-27 — GenBank