Protein

View in Explore
Genbank accession
YP_010089118.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,98
Protein sequence
MSNNTINHVSDKSIYVTFDPTGTDWPDTITNVQDALEKIGSWARTDTGLPIATTSVRGIAQIATEADIDAGTDNTKIVTPKLLAYRMQNPKASQTVWGYTKYSTDAESTTVTNDASSITPRSLNYVFNNRKGTESVWGSSKIATTAQAVAGTDNTVTMTPLKVKQAIASLVPVQSSATESSQGLVQLATVAQVQAGTIREGYAISPYTFIRLTATESNLGVIRIASQAEANAGTDDTKAITAKKLINTRATGSQFGVVKLATTVGYVANTALSSNAAVLPSDRNAVINGSLYENSAIYNNKYQTWTDLDWHFPVGAIVMTGFQTDHGSLYICDGRSLNKNNYPLLFERIGYTFGGGGDWFNLPDCRGVAVRGHDRGRGLNPNRGYGTYEGDMLGWHEHPLQLIYQNGGNIPKWQAVYELKSAEKNDQSARVFDSSITKATGVGGEETRMKNIALNYVIRVL
Physico‐chemical
properties
protein length:461 AA
molecular weight: 49841,02380 Da
isoelectric point:7,01856
aromaticity:0,08243
hydropathy:-0,31996

Domains

View on InterPro
Domain architecture
YP_010089118.1
1 461 aa
STR 242–300 · ATT 301–368 · STR 369–460 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_010089118.1
1 461 aa
Domain Start End Length (AA) Confidence
N-terminal 1 371 371 0,7033
Central domain 372 450 80 0,0008
C-terminal 451 461 10 0,9963
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Escherichia phage phT4A [NCBI] · taxon 1852638
Uroviricota Caudoviricetes Pantevenvirales Slopekvirus Slopekvirus pht4A
Host
Escherichia coli [NCBI] · taxon 562
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Coding sequence (CDS)

Genbank protein accession
YP_010089118.1 [NCBI]
Genbank nucleotide accession
NC_055712 [NCBI]
CDS location
range 112392 -> 113777
strand +
CDS
ATGAGTAACAATACAATCAACCACGTAAGTGATAAATCCATTTACGTGACATTTGACCCAACAGGTACTGATTGGCCTGATACCATAACCAACGTACAAGATGCGTTGGAAAAAATAGGTAGTTGGGCGCGTACTGATACTGGGCTTCCTATCGCAACAACTTCTGTTCGTGGTATTGCTCAGATCGCAACCGAAGCTGATATTGACGCTGGCACGGATAACACTAAGATTGTTACTCCGAAACTGTTAGCATATCGTATGCAGAACCCTAAAGCATCACAAACCGTATGGGGTTATACGAAGTATTCGACTGATGCGGAATCTACAACCGTAACTAACGATGCATCGTCTATTACTCCGCGATCTCTGAACTATGTGTTCAATAACCGTAAAGGTACAGAATCGGTTTGGGGTTCTTCTAAAATTGCTACCACTGCACAGGCGGTTGCTGGTACAGATAACACTGTAACTATGACTCCGCTTAAAGTCAAGCAAGCGATCGCGTCCCTGGTTCCTGTTCAGTCAAGCGCGACCGAAAGCTCGCAAGGTTTGGTACAACTGGCAACAGTTGCACAGGTTCAGGCTGGTACGATCCGTGAAGGGTATGCAATTTCACCTTATACGTTTATTCGTTTAACTGCAACTGAAAGCAACCTGGGCGTTATTCGTATCGCATCACAGGCAGAAGCAAACGCGGGTACTGATGACACCAAAGCGATTACTGCGAAAAAATTAATCAATACCCGTGCAACTGGATCTCAGTTCGGTGTTGTCAAATTAGCAACAACTGTTGGTTATGTGGCAAACACTGCACTTTCTTCAAACGCTGCTGTATTACCTAGTGATCGAAATGCGGTAATTAACGGTTCTCTTTATGAGAATAGCGCAATATATAACAACAAATATCAGACGTGGACAGATCTTGATTGGCATTTCCCAGTAGGTGCTATTGTCATGACTGGTTTTCAGACTGACCACGGTAGTTTGTATATTTGTGATGGTCGCTCACTGAATAAAAATAACTATCCGTTACTTTTTGAGCGTATAGGTTATACATTTGGTGGTGGCGGTGATTGGTTTAACCTTCCAGATTGTCGAGGCGTTGCAGTACGTGGTCATGACCGTGGACGCGGATTAAACCCTAATCGTGGGTATGGTACATATGAAGGCGATATGTTGGGCTGGCACGAACACCCATTACAGCTTATCTACCAGAACGGCGGTAATATTCCGAAATGGCAAGCAGTTTATGAACTTAAAAGCGCCGAGAAAAACGATCAGAGTGCTCGCGTGTTTGATTCTTCCATAACTAAAGCTACTGGTGTGGGCGGAGAAGAAACCCGCATGAAAAACATCGCATTAAACTACGTAATTCGCGTATTATAA

Genome Context

Tertiary structure

YP_010089118.1
ESMFold structure
Source ESMFold
pLDDT 72.7
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Characterization and in vitro evaluation of new bacteriophages for the biocontrol of Escherichia coli Pereira,C., Moreirinha,C., Cunha,A., Lewicka,M., Almeida,P.J., Clemente,C., Romalde,J.L., Nunes,M.L. and Almeida,A. — — GenBank