Phage RBP Database

Genbank accession

YP_008130362.1 [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,99

Seq2Symm

C3 confidence 1,000

C3	1,000
C1	0,013
C5	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSSGCGDVLSLEDLKTAKKHQLFEAEVITGRSGGVATGAFIDIATNQATGQVQKTMPAVLRDIGFAPASFDFNTGGTISDRNVAVLWPLPGGDGDWYVWEGALPKIIPAASTPDSTGGVAAGAWKAVNSNALRDQLSVVSPEMFGAIGNGIADDTIAWQAMDSYVSARATASHIITIIASRKYRVTAQLNGWSYVNLLGGGTLIYDGADQLNSTVLTYNSKTKFNISNINITRNFNDPFALRSKGAYGLTLASCSDFSVVGCDIYMHTDALSVMDSDRFKIESNRTHELGEEGIAVRRSRNWSVINNDVYHHNGDGILIKTGNVSSYAGSICDNRVYDGIQSAGTAGGNRGGGITGNDEVIGGGATESFNRLIVERNHCYNVSYGIAFTNIVDLSMSNNMVNNIDRFGIIIDTALFNNPNKNPVKRISVSNNHVSGTVQAGLLFTGTADISVSQVTISNNIVDTCGTSTAAGYPAIGASFASVTGNKVTNCKIGLQVEGCATTGNVITDSTYTSSAPASVWVKIIGGGSFNGNSLSDSKFGHIRFSSISGLTFTGNTITTASSFACLYFDSVSSGSTCIFRANNYVSAFTNVSVFNIGAVPAVPALVGDELIVSSPPAGGIRRLVCVTAGNPGVYVPVEWNIISAVSSSSSPTINAGASLRITGTAAGVASNSACVGAKFNQDPQGVDMVASVTGAGTVTFILTNNTGSSKTFSNLVMTAYCHS

Physico‐chemical properties

protein length:	724 AA
molecular weight:	75413,41280 Da
isoelectric point:	5,82880
aromaticity:	0,07873
hydropathy:	0,07403

Domain architecture

YP_008130362.1

1 724 aa

ATT 65–138 · STR 139–563 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.10.10.80
ATT

G3DSA:2.10.10.80 IPR012334 IPR006626 IPR006626 IPR006626

IPR040775
RBD

IPR040775 IPR011050

IPR039448
ENZ

IPR039448 IPR006626 IPR006626 IPR006626

IPR006626
Unmapped

IPR006626 IPR006626 IPR011050

IPR011050
STR

IPR011050

YP_008130362.1

1724 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0018
ATT

DC_0018 DC_2234 DC_0276

YP_008130362.1

1724 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	65	138	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR040775	RBD	DC_0821	71	127	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
IPR012334	STR	IPR012334	139	441	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	147	438	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR039448	ENZ	DC_0799	215	341	InterPro cluster	Right handed beta helix domain	C-terminal	High	Text match	178 proteins / 183 hits
IPR006626	Unmapped	-	276	298	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	299	321	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	369	390	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR011050	STR	IPR011050	375	560	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR011050	STR	IPR011050	375	563	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR006626	Unmapped	-	391	413	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	424	446	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	452	477	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	478	499	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	548	571	InterPro	Parallel beta-helix repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_008130362.1

1 724 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	154	154	0,9885
Central domain	155	589	436	0,9944
C-terminal	590	724	134	0,9840

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Serratia phage Eta [NCBI] · taxon 1282995

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Serratia marcescens [NCBI] · taxon 615

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_008130362.1 [NCBI]

Genbank nucleotide accession

NC_021563 [NCBI]

CDS location

range 40550 -> 42724
strand +

CDS

ATGTCTAGCGGCTGCGGTGACGTCTTGTCACTTGAAGACCTGAAAACAGCGAAAAAACATCAACTTTTCGAAGCAGAGGTTATTACCGGCCGTTCCGGCGGAGTGGCCACTGGGGCATTTATCGATATTGCGACGAACCAAGCAACGGGCCAAGTTCAAAAAACTATGCCCGCAGTACTGCGCGACATTGGCTTTGCGCCAGCATCGTTCGATTTTAATACCGGTGGGACTATTTCAGATCGTAATGTTGCCGTGTTATGGCCTCTCCCTGGTGGAGATGGAGATTGGTATGTGTGGGAAGGTGCATTACCTAAAATTATTCCTGCTGCGTCCACACCTGATTCCACCGGCGGGGTAGCAGCCGGGGCGTGGAAAGCCGTAAATAGTAATGCGTTACGTGACCAGTTATCTGTAGTGTCCCCGGAAATGTTTGGCGCAATAGGTAACGGGATCGCAGATGATACTATTGCTTGGCAAGCGATGGATAGCTATGTGTCAGCCAGAGCCACTGCAAGCCATATTATTACGATTATTGCATCGAGGAAATATAGGGTAACCGCGCAACTTAATGGGTGGAGTTACGTTAACTTATTAGGCGGCGGAACTCTAATCTATGACGGCGCTGACCAGTTAAACTCAACGGTACTTACGTATAATAGTAAGACTAAATTCAATATTTCTAATATAAATATTACTAGAAATTTCAATGACCCTTTCGCTCTGCGGTCTAAAGGGGCGTATGGATTAACACTAGCATCCTGCTCTGATTTCTCGGTGGTAGGGTGCGATATCTATATGCACACAGACGCGCTGTCTGTTATGGATTCTGATAGATTTAAAATTGAATCTAACCGTACACATGAATTAGGTGAAGAGGGTATTGCAGTGCGCCGCTCTCGCAACTGGAGCGTAATTAACAATGATGTGTACCACCATAACGGTGATGGGATATTAATAAAAACTGGCAACGTTTCAAGTTACGCCGGCAGCATTTGCGATAACCGAGTGTACGACGGTATCCAGTCCGCTGGCACTGCCGGGGGTAACCGCGGCGGGGGCATTACGGGTAATGACGAGGTAATCGGCGGAGGCGCCACTGAGTCTTTTAATCGTCTAATTGTAGAAAGAAACCATTGCTATAATGTTAGCTACGGCATCGCCTTTACTAATATTGTCGACCTGTCAATGTCTAACAACATGGTTAATAACATCGACCGTTTTGGCATTATTATCGACACTGCGCTTTTTAATAACCCTAACAAGAATCCGGTAAAACGTATCAGTGTTAGTAACAACCATGTGTCAGGTACAGTGCAGGCCGGGCTATTATTTACCGGGACTGCGGATATATCGGTTAGTCAAGTAACGATATCAAACAACATAGTTGATACTTGCGGCACCTCCACCGCCGCTGGGTACCCAGCTATCGGAGCATCTTTTGCATCTGTAACCGGTAACAAGGTTACCAATTGCAAGATTGGTCTACAGGTGGAAGGGTGCGCTACTACCGGTAACGTTATTACGGATTCAACTTATACTAGCTCCGCGCCAGCGTCGGTGTGGGTTAAGATAATCGGCGGCGGCAGCTTCAATGGGAACAGTTTATCCGATTCAAAATTCGGACACATCAGATTCTCCAGTATAAGCGGTTTAACATTTACCGGGAACACGATCACAACGGCGAGTAGTTTCGCCTGCTTATATTTTGACTCTGTTTCCTCCGGTAGCACCTGTATTTTTAGAGCTAACAATTATGTGAGCGCATTCACTAATGTGTCAGTTTTTAACATTGGCGCCGTGCCCGCCGTACCCGCGTTAGTAGGCGATGAGCTAATCGTGTCCTCTCCGCCTGCGGGCGGCATTCGCCGGTTGGTGTGCGTAACTGCCGGCAATCCAGGCGTTTACGTCCCTGTTGAGTGGAATATAATTTCTGCGGTTTCGTCATCCAGCAGCCCAACCATAAATGCTGGTGCATCATTACGTATAACCGGAACAGCCGCTGGGGTGGCGAGCAATTCAGCCTGTGTTGGGGCTAAATTTAACCAAGACCCGCAAGGGGTTGATATGGTAGCGTCGGTTACTGGCGCCGGGACAGTCACGTTCATCCTGACCAACAACACCGGATCAAGCAAAACATTTAGTAATTTGGTAATGACGGCGTATTGCCATTCATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)