Protein

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Genbank accession
YP_008130362.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLEDLKTAKKHQLFEAEVITGRSGGVATGAFIDIATNQATGQVQKTMPAVLRDIGFAPASFDFNTGGTISDRNVAVLWPLPGGDGDWYVWEGALPKIIPAASTPDSTGGVAAGAWKAVNSNALRDQLSVVSPEMFGAIGNGIADDTIAWQAMDSYVSARATASHIITIIASRKYRVTAQLNGWSYVNLLGGGTLIYDGADQLNSTVLTYNSKTKFNISNINITRNFNDPFALRSKGAYGLTLASCSDFSVVGCDIYMHTDALSVMDSDRFKIESNRTHELGEEGIAVRRSRNWSVINNDVYHHNGDGILIKTGNVSSYAGSICDNRVYDGIQSAGTAGGNRGGGITGNDEVIGGGATESFNRLIVERNHCYNVSYGIAFTNIVDLSMSNNMVNNIDRFGIIIDTALFNNPNKNPVKRISVSNNHVSGTVQAGLLFTGTADISVSQVTISNNIVDTCGTSTAAGYPAIGASFASVTGNKVTNCKIGLQVEGCATTGNVITDSTYTSSAPASVWVKIIGGGSFNGNSLSDSKFGHIRFSSISGLTFTGNTITTASSFACLYFDSVSSGSTCIFRANNYVSAFTNVSVFNIGAVPAVPALVGDELIVSSPPAGGIRRLVCVTAGNPGVYVPVEWNIISAVSSSSSPTINAGASLRITGTAAGVASNSACVGAKFNQDPQGVDMVASVTGAGTVTFILTNNTGSSKTFSNLVMTAYCHS
Physico‐chemical
properties
protein length:724 AA
molecular weight: 75413,41280 Da
isoelectric point:5,82880
aromaticity:0,07873
hydropathy:0,07403

Domains

Domains [InterPro]
DC_0018
ATT
1–249
DC_0018 DC_2234 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 DC_0276
G3DSA:2.10.10.80
ATT
65–138
G3DSA:2.10.10.80 IPR012334 IPR006626
IPR040775
RBD
71–127
IPR040775 IPR011050
IPR039448
ENZ
215–341
IPR039448 IPR011050
IPR006626
Unmapped
276–298
IPR006626 IPR006626 IPR011050
YP_008130362.1
1 724
Architecture
ATT
STR
RBD
ATT 1-249 | STR 250-563 | RBD 564-697 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008130362.1
1 724
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9885
Central domain 155 589 436 0,9944
C-terminal 590 724 134 0,9840
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-589
C-terminal
590-724

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage Eta
[NCBI] 		1282995 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008130362.1 [NCBI]
Genbank nucleotide accession
NC_021563 [NCBI]
CDS location
range 40550 -> 42724
strand +
CDS
ATGTCTAGCGGCTGCGGTGACGTCTTGTCACTTGAAGACCTGAAAACAGCGAAAAAACATCAACTTTTCGAAGCAGAGGTTATTACCGGCCGTTCCGGCGGAGTGGCCACTGGGGCATTTATCGATATTGCGACGAACCAAGCAACGGGCCAAGTTCAAAAAACTATGCCCGCAGTACTGCGCGACATTGGCTTTGCGCCAGCATCGTTCGATTTTAATACCGGTGGGACTATTTCAGATCGTAATGTTGCCGTGTTATGGCCTCTCCCTGGTGGAGATGGAGATTGGTATGTGTGGGAAGGTGCATTACCTAAAATTATTCCTGCTGCGTCCACACCTGATTCCACCGGCGGGGTAGCAGCCGGGGCGTGGAAAGCCGTAAATAGTAATGCGTTACGTGACCAGTTATCTGTAGTGTCCCCGGAAATGTTTGGCGCAATAGGTAACGGGATCGCAGATGATACTATTGCTTGGCAAGCGATGGATAGCTATGTGTCAGCCAGAGCCACTGCAAGCCATATTATTACGATTATTGCATCGAGGAAATATAGGGTAACCGCGCAACTTAATGGGTGGAGTTACGTTAACTTATTAGGCGGCGGAACTCTAATCTATGACGGCGCTGACCAGTTAAACTCAACGGTACTTACGTATAATAGTAAGACTAAATTCAATATTTCTAATATAAATATTACTAGAAATTTCAATGACCCTTTCGCTCTGCGGTCTAAAGGGGCGTATGGATTAACACTAGCATCCTGCTCTGATTTCTCGGTGGTAGGGTGCGATATCTATATGCACACAGACGCGCTGTCTGTTATGGATTCTGATAGATTTAAAATTGAATCTAACCGTACACATGAATTAGGTGAAGAGGGTATTGCAGTGCGCCGCTCTCGCAACTGGAGCGTAATTAACAATGATGTGTACCACCATAACGGTGATGGGATATTAATAAAAACTGGCAACGTTTCAAGTTACGCCGGCAGCATTTGCGATAACCGAGTGTACGACGGTATCCAGTCCGCTGGCACTGCCGGGGGTAACCGCGGCGGGGGCATTACGGGTAATGACGAGGTAATCGGCGGAGGCGCCACTGAGTCTTTTAATCGTCTAATTGTAGAAAGAAACCATTGCTATAATGTTAGCTACGGCATCGCCTTTACTAATATTGTCGACCTGTCAATGTCTAACAACATGGTTAATAACATCGACCGTTTTGGCATTATTATCGACACTGCGCTTTTTAATAACCCTAACAAGAATCCGGTAAAACGTATCAGTGTTAGTAACAACCATGTGTCAGGTACAGTGCAGGCCGGGCTATTATTTACCGGGACTGCGGATATATCGGTTAGTCAAGTAACGATATCAAACAACATAGTTGATACTTGCGGCACCTCCACCGCCGCTGGGTACCCAGCTATCGGAGCATCTTTTGCATCTGTAACCGGTAACAAGGTTACCAATTGCAAGATTGGTCTACAGGTGGAAGGGTGCGCTACTACCGGTAACGTTATTACGGATTCAACTTATACTAGCTCCGCGCCAGCGTCGGTGTGGGTTAAGATAATCGGCGGCGGCAGCTTCAATGGGAACAGTTTATCCGATTCAAAATTCGGACACATCAGATTCTCCAGTATAAGCGGTTTAACATTTACCGGGAACACGATCACAACGGCGAGTAGTTTCGCCTGCTTATATTTTGACTCTGTTTCCTCCGGTAGCACCTGTATTTTTAGAGCTAACAATTATGTGAGCGCATTCACTAATGTGTCAGTTTTTAACATTGGCGCCGTGCCCGCCGTACCCGCGTTAGTAGGCGATGAGCTAATCGTGTCCTCTCCGCCTGCGGGCGGCATTCGCCGGTTGGTGTGCGTAACTGCCGGCAATCCAGGCGTTTACGTCCCTGTTGAGTGGAATATAATTTCTGCGGTTTCGTCATCCAGCAGCCCAACCATAAATGCTGGTGCATCATTACGTATAACCGGAACAGCCGCTGGGGTGGCGAGCAATTCAGCCTGTGTTGGGGCTAAATTTAACCAAGACCCGCAAGGGGTTGATATGGTAGCGTCGGTTACTGGCGCCGGGACAGTCACGTTCATCCTGACCAACAACACCGGATCAAGCAAAACATTTAGTAATTTGGTAATGACGGCGTATTGCCATTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
967c09eecd3521c06d8f845842b884d1aae46d1aea0cd6e63f4db422a4d8d259
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8158
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50