Protein

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Genbank accession
QXO12505.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,50
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MSIRFNHASNTVTGTDVIKLVVEGGTPTAPRPFRIDSSSVIMPNKQLPSGEAGALVFDIVSKTLKYHNGISWVELLSQDDILAPIQISLTDIYNQLANRVSTVTYSTSSVPSASVSGTNLNIIFPSSGGGGGTDIPGLFTSSPPGSIMQYSLSSGQSVASIREQMSGVSGGQNGRNGTASAPYVTKTGWCFADGSYWTWNGESGSVTKVVPNLNQNAYLKGITTTGLTKTDAVISGSGSIGNTSISFPQHYHGTGMMVGLSGDWGDDGYFISNKTWNDGIQYQGVQITGDLQRRTTGPVNGSDARTALSTSLAIFTGSDTTSHTHSLNSVDVAHFNVAVVYNIAEPSSALNQNAGDRRYVLKSGDTMTGSLTIANSAAIQANDTNLVLWFRNASGGERAAIYHASNTNTLRLRTAGGSEMSLNNVGLLNVASITTGSITGSSLNISGTATTGPLNVNGQITATGDIWAFSDERLKENIKPIENAVDIIKSIRGVTGNFIGDERTRSMVIAQEVQKNFPCAVTEDVSGFLKVNYDALIPLLLNAVSTMSEEIASLRSIIK
Physico‐chemical
properties
protein length:559 AA
molecular weight: 58823,86930 Da
isoelectric point:5,78578
aromaticity:0,06619
hydropathy:-0,10966

Domains

Domains [InterPro]
DC_0139
STR
5–559
DC_0139
IPR030392
CHP
470–521
IPR030392
IPR030392
CHP
470–558
IPR030392
QXO12505.1
1 559
Architecture
STR
STR 5-559
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QXO12505.1
1 559
Domain Start End Length (AA) Confidence
N-terminal 1 207 207 0,5915
Central domain 208 406 200 0,3691
C-terminal 407 559 152 0,9227
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-207
Central
208-406
C-terminal
407-559

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage pEa_SNUABM_49
[NCBI] 		2859284 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXO12505.1 [NCBI]
Genbank nucleotide accession
MW879344.1 [NCBI]
CDS location
range 186163 -> 187842
strand +
CDS
ATGAGTATAAGATTTAATCATGCCAGTAATACAGTTACTGGTACAGATGTAATCAAATTAGTGGTTGAAGGTGGGACACCAACTGCACCAAGACCATTTAGAATTGATTCATCTTCAGTTATTATGCCTAACAAACAATTACCTTCTGGTGAAGCAGGGGCATTAGTTTTTGATATTGTATCAAAAACATTAAAATATCATAATGGTATTTCATGGGTAGAGTTATTATCACAAGATGATATTCTAGCACCTATACAAATATCATTAACGGACATTTATAACCAATTAGCGAACCGTGTAAGTACTGTAACATATAGTACCAGTTCAGTACCTTCTGCGTCCGTAAGTGGAACAAACTTAAATATCATATTTCCATCATCAGGTGGAGGTGGTGGCACAGACATTCCTGGATTATTCACTTCTTCTCCACCAGGTTCTATCATGCAATATTCTTTGTCATCTGGTCAATCTGTTGCATCTATCAGAGAACAAATGAGTGGTGTTAGTGGTGGACAAAATGGTAGAAATGGTACAGCTTCAGCTCCATATGTAACAAAAACTGGATGGTGTTTTGCAGATGGTTCTTATTGGACATGGAATGGAGAAAGTGGTTCAGTAACCAAAGTTGTTCCAAATTTAAACCAAAATGCATATTTAAAAGGTATAACCACAACTGGTCTTACTAAGACAGATGCAGTAATTTCAGGTTCAGGTTCAATAGGAAATACGTCAATATCTTTCCCACAACACTATCATGGTACTGGTATGATGGTTGGATTATCTGGTGATTGGGGTGATGATGGATATTTCATTAGTAATAAAACATGGAATGATGGAATACAATATCAGGGAGTACAGATAACAGGTGATTTACAACGTAGAACAACTGGTCCAGTTAACGGTTCAGATGCTCGAACAGCATTAAGCACTTCTTTAGCAATATTCACTGGTTCAGATACTACTTCTCATACTCACAGCTTAAATAGTGTTGACGTAGCTCACTTTAATGTTGCTGTGGTATATAATATTGCAGAACCAAGCTCAGCACTTAATCAAAATGCTGGTGATCGCCGTTATGTATTAAAATCTGGTGATACTATGACTGGTTCATTGACTATCGCTAATAGTGCTGCAATTCAAGCAAATGATACAAATCTAGTACTATGGTTTAGAAATGCATCTGGTGGTGAACGTGCTGCAATATATCATGCATCTAATACTAATACTCTTAGATTGCGTACTGCTGGTGGTTCTGAAATGTCATTAAATAATGTAGGACTATTAAATGTGGCCTCAATTACTACTGGTTCAATTACAGGTTCATCATTGAACATATCTGGTACAGCAACAACTGGCCCATTAAATGTTAATGGACAAATAACAGCCACTGGTGATATTTGGGCATTCTCTGATGAAAGATTGAAAGAAAATATTAAACCTATTGAAAATGCCGTAGATATAATTAAAAGTATTCGTGGTGTAACTGGTAATTTTATTGGAGATGAACGTACACGTTCAATGGTTATTGCTCAAGAAGTCCAGAAGAACTTCCCTTGTGCTGTAACTGAAGATGTATCAGGATTCTTAAAAGTTAATTATGATGCCCTTATTCCATTGTTGTTAAATGCAGTCTCTACTATGAGTGAAGAAATTGCAAGTTTAAGGAGCATAATTAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5641ae33c1d612e25bda264b09c28989bfd1959ac64eb1b1b9546afd710289a0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5877
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Erwinia phage pEa_SNUABM_49 Kim,S.G., Lee,S.B. and Park,S.C. 2021-01-07 — GenBank