Protein

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Genbank accession
BFW51899.1 [GenBank]
Protein name
Fiber protein, tail spike-like protein Glycoside hydrolase family 55 protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAWSRPEIISGVTRGTKEFFDKILDGVGVALSDVETVSLEQSAVGGSFVIAAPHAFPGLDPTGATDSSAAFQAAINATPDGARLIVPAGVYKLDSGVAITDRTLTIESYGVTYTKATDGAIFSSAATVDTVYPVTALAAVTVNDENTAPGQRLTVSGNSGWSRGDIVQLVSDDVLPGGLPGGGTNEYRCGQHFMVHAASAGTVDLLGTLYDPMSTNIRVHRMRRHRVVFRGGRFTKTGGGVTVAFTRLVAPEFADAVVHTTGGQAVSFAGCVGWRADNVVVENAPNIPTSGIFGYGIMNMSSSWGRASRLRIHRVRHAYTNDNTALPAGSTQFHLYGRPFANVVSDSVAIGTDNSAWDTHSGSQAEQFVNCDAIDCYNVYGLRGRGHSVQGGKAVDCQHLLNIFSQTGSNSDSWGHIVDGVHATRITSGNHAIRVDLNPISGVLETRKSMIRNVTIDGAAAHTFVVNNGTLEVDGIMVTAAPTQISNAAVFQLDNANVTGTNVSMDHLQNTAGTGIRFVYVKGATQFTLRRGRWDFTSGNSRMTRIVVRAAGATDTVKISDLSMLNKTTAPYDTITSASFVDWSAGFELSSVVMASQASIEDAAKLATIANTRAEVVKLQLYSNTSPYTLAALPAGMFRGQMLVMFTLANTNQTITIPNDAAKKILTASGSSIALTGTSLPISFVWNGTNWMQTANV
Physico‐chemical
properties
protein length:697 AA
molecular weight: 73624,80860 Da
isoelectric point:6,62688
aromaticity:0,07461
hydropathy:0,01133

Domains

Domains [InterPro]
DC_0685
STR
50–98
DC_0685 DC_1484
IPR011050
STR
58–523
IPR011050 IPR057996
IPR012334
STR
58–574
IPR012334
BFW51899.1
1 697
Architecture
STR
STR 50-696 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BFW51899.1
1 697
Domain Start End Length (AA) Confidence
N-terminal 1 63 63 0,9614
Central domain 64 594 532 0,9897
C-terminal 595 697 102 0,9882
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-63
Central
64-594
C-terminal
595-697

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodococcus phage ReT1v-2
[NCBI] 		3384246 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Prescottella equi
[NCBI] 		43767 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BFW51899.1 [NCBI]
Genbank nucleotide accession
LC859274.1 [NCBI]
CDS location
range 8375 -> 10468
strand +
CDS
GTGGCGTGGTCGCGTCCTGAGATCATTAGCGGGGTCACCCGCGGTACCAAAGAGTTTTTCGACAAGATTTTGGATGGCGTCGGTGTGGCGTTGTCTGATGTTGAGACAGTGAGTCTCGAACAATCGGCAGTCGGCGGCAGTTTCGTCATCGCAGCACCACATGCGTTCCCGGGGCTGGACCCCACTGGCGCCACTGATTCGTCGGCAGCATTCCAAGCGGCGATCAATGCGACGCCGGACGGTGCACGCTTGATCGTTCCTGCTGGCGTGTACAAGCTCGATTCTGGCGTGGCGATCACGGACCGCACGCTGACGATCGAGTCCTACGGCGTGACCTACACCAAGGCCACTGATGGGGCGATCTTCTCGTCCGCCGCAACGGTCGACACCGTGTATCCAGTCACGGCCCTCGCCGCGGTGACCGTGAACGACGAGAACACCGCGCCCGGTCAGCGATTGACCGTTTCAGGCAACAGCGGATGGTCGCGTGGCGACATCGTCCAACTCGTCTCCGACGACGTCCTACCTGGCGGCCTACCCGGCGGCGGAACCAACGAGTATCGGTGCGGCCAGCACTTCATGGTCCACGCGGCATCCGCCGGCACCGTGGACCTTCTCGGCACCCTGTACGACCCGATGTCGACGAACATCCGTGTCCACCGGATGCGCCGGCACCGAGTCGTGTTCCGTGGTGGCCGGTTCACCAAGACCGGCGGAGGCGTCACCGTCGCCTTCACGCGTCTCGTCGCACCCGAGTTCGCCGACGCCGTCGTTCACACGACTGGCGGGCAAGCGGTCTCGTTCGCGGGCTGCGTCGGCTGGCGTGCAGACAACGTTGTCGTCGAGAATGCCCCGAACATCCCCACATCGGGCATCTTCGGCTACGGCATCATGAACATGTCCAGTTCCTGGGGCCGCGCCTCTCGGCTTCGGATCCATCGCGTGCGCCACGCGTACACGAACGACAACACCGCACTGCCCGCGGGTTCGACGCAGTTCCACCTGTACGGGCGCCCGTTCGCGAACGTCGTCAGTGACTCTGTCGCGATCGGCACCGACAACAGCGCGTGGGACACCCACTCTGGTAGCCAGGCAGAGCAGTTCGTCAACTGCGACGCGATCGACTGCTACAACGTCTACGGGCTCCGCGGCCGCGGACACAGCGTCCAGGGCGGCAAGGCGGTTGACTGCCAGCACCTGCTGAACATCTTCTCCCAGACCGGCTCGAACTCCGACTCGTGGGGACACATCGTCGACGGCGTGCACGCCACGCGGATCACCAGCGGAAACCACGCGATCCGCGTCGACCTCAACCCCATCAGCGGCGTGCTCGAAACCCGAAAGTCGATGATCCGCAACGTCACCATCGACGGGGCCGCAGCGCACACGTTCGTCGTCAACAACGGCACCCTCGAGGTCGACGGAATCATGGTCACCGCCGCCCCTACGCAGATCTCGAACGCCGCGGTGTTCCAGCTCGACAACGCGAACGTCACCGGCACGAACGTGTCGATGGACCACCTGCAGAACACCGCAGGAACCGGCATCCGGTTCGTGTACGTCAAGGGCGCAACACAGTTCACGCTGCGGCGTGGACGGTGGGACTTCACAAGCGGCAACTCCCGCATGACACGCATCGTGGTCCGCGCCGCCGGCGCCACTGACACGGTGAAGATCAGCGACCTGTCGATGCTGAACAAGACCACAGCCCCGTACGACACGATCACATCGGCGTCGTTCGTGGACTGGTCGGCCGGGTTCGAACTGTCCTCGGTCGTCATGGCATCTCAGGCGTCGATCGAGGACGCAGCGAAACTGGCCACGATCGCGAACACTCGCGCCGAGGTCGTGAAGCTGCAGCTGTACTCGAACACCAGCCCGTACACGCTGGCCGCCCTGCCCGCTGGCATGTTCCGTGGGCAGATGCTGGTGATGTTCACGCTGGCGAACACAAACCAGACGATCACGATCCCGAACGACGCGGCGAAGAAGATTCTGACCGCCTCTGGTTCGAGCATCGCGTTGACCGGCACCAGTTTGCCGATCTCGTTCGTGTGGAACGGCACCAATTGGATGCAGACGGCCAACGTGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
eb3b11afb531bcf8d720e0019c00cd302e66c1353e23ab418dac6e08fe7652a4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8813
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Rhodococcus bacteriophage ReT1v-2 Suzuki,Y., Kubota,H., Ishitsuka,T., Takai,S. and Kakuda,T. 2015-04-30 — GenBank