Protein

View in Explore
Genbank accession
BFW51899.1 [GenBank]
Protein name
Fiber protein, tail spike-like protein Glycoside hydrolase family 55 protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
TF
Evidence Phold
Probability 1,00
Protein sequence
MAWSRPEIISGVTRGTKEFFDKILDGVGVALSDVETVSLEQSAVGGSFVIAAPHAFPGLDPTGATDSSAAFQAAINATPDGARLIVPAGVYKLDSGVAITDRTLTIESYGVTYTKATDGAIFSSAATVDTVYPVTALAAVTVNDENTAPGQRLTVSGNSGWSRGDIVQLVSDDVLPGGLPGGGTNEYRCGQHFMVHAASAGTVDLLGTLYDPMSTNIRVHRMRRHRVVFRGGRFTKTGGGVTVAFTRLVAPEFADAVVHTTGGQAVSFAGCVGWRADNVVVENAPNIPTSGIFGYGIMNMSSSWGRASRLRIHRVRHAYTNDNTALPAGSTQFHLYGRPFANVVSDSVAIGTDNSAWDTHSGSQAEQFVNCDAIDCYNVYGLRGRGHSVQGGKAVDCQHLLNIFSQTGSNSDSWGHIVDGVHATRITSGNHAIRVDLNPISGVLETRKSMIRNVTIDGAAAHTFVVNNGTLEVDGIMVTAAPTQISNAAVFQLDNANVTGTNVSMDHLQNTAGTGIRFVYVKGATQFTLRRGRWDFTSGNSRMTRIVVRAAGATDTVKISDLSMLNKTTAPYDTITSASFVDWSAGFELSSVVMASQASIEDAAKLATIANTRAEVVKLQLYSNTSPYTLAALPAGMFRGQMLVMFTLANTNQTITIPNDAAKKILTASGSSIALTGTSLPISFVWNGTNWMQTANV
Physico‐chemical
properties
protein length:697 AA
molecular weight: 73624,80860 Da
isoelectric point:6,62688
aromaticity:0,07461
hydropathy:0,01133

Domains

Domains [InterPro]
IPR011050
58–523
IPR011050 IPR057996
IPR012334
58–574
IPR012334
BFW51899.1
1 697
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodococcus phage ReT1v-2
[NCBI] 		3384246 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BFW51899.1 [NCBI]
Genbank nucleotide accession
LC859274.1 [NCBI]
CDS location
range 8375 -> 10468
strand +
CDS
GTGGCGTGGTCGCGTCCTGAGATCATTAGCGGGGTCACCCGCGGTACCAAAGAGTTTTTCGACAAGATTTTGGATGGCGTCGGTGTGGCGTTGTCTGATGTTGAGACAGTGAGTCTCGAACAATCGGCAGTCGGCGGCAGTTTCGTCATCGCAGCACCACATGCGTTCCCGGGGCTGGACCCCACTGGCGCCACTGATTCGTCGGCAGCATTCCAAGCGGCGATCAATGCGACGCCGGACGGTGCACGCTTGATCGTTCCTGCTGGCGTGTACAAGCTCGATTCTGGCGTGGCGATCACGGACCGCACGCTGACGATCGAGTCCTACGGCGTGACCTACACCAAGGCCACTGATGGGGCGATCTTCTCGTCCGCCGCAACGGTCGACACCGTGTATCCAGTCACGGCCCTCGCCGCGGTGACCGTGAACGACGAGAACACCGCGCCCGGTCAGCGATTGACCGTTTCAGGCAACAGCGGATGGTCGCGTGGCGACATCGTCCAACTCGTCTCCGACGACGTCCTACCTGGCGGCCTACCCGGCGGCGGAACCAACGAGTATCGGTGCGGCCAGCACTTCATGGTCCACGCGGCATCCGCCGGCACCGTGGACCTTCTCGGCACCCTGTACGACCCGATGTCGACGAACATCCGTGTCCACCGGATGCGCCGGCACCGAGTCGTGTTCCGTGGTGGCCGGTTCACCAAGACCGGCGGAGGCGTCACCGTCGCCTTCACGCGTCTCGTCGCACCCGAGTTCGCCGACGCCGTCGTTCACACGACTGGCGGGCAAGCGGTCTCGTTCGCGGGCTGCGTCGGCTGGCGTGCAGACAACGTTGTCGTCGAGAATGCCCCGAACATCCCCACATCGGGCATCTTCGGCTACGGCATCATGAACATGTCCAGTTCCTGGGGCCGCGCCTCTCGGCTTCGGATCCATCGCGTGCGCCACGCGTACACGAACGACAACACCGCACTGCCCGCGGGTTCGACGCAGTTCCACCTGTACGGGCGCCCGTTCGCGAACGTCGTCAGTGACTCTGTCGCGATCGGCACCGACAACAGCGCGTGGGACACCCACTCTGGTAGCCAGGCAGAGCAGTTCGTCAACTGCGACGCGATCGACTGCTACAACGTCTACGGGCTCCGCGGCCGCGGACACAGCGTCCAGGGCGGCAAGGCGGTTGACTGCCAGCACCTGCTGAACATCTTCTCCCAGACCGGCTCGAACTCCGACTCGTGGGGACACATCGTCGACGGCGTGCACGCCACGCGGATCACCAGCGGAAACCACGCGATCCGCGTCGACCTCAACCCCATCAGCGGCGTGCTCGAAACCCGAAAGTCGATGATCCGCAACGTCACCATCGACGGGGCCGCAGCGCACACGTTCGTCGTCAACAACGGCACCCTCGAGGTCGACGGAATCATGGTCACCGCCGCCCCTACGCAGATCTCGAACGCCGCGGTGTTCCAGCTCGACAACGCGAACGTCACCGGCACGAACGTGTCGATGGACCACCTGCAGAACACCGCAGGAACCGGCATCCGGTTCGTGTACGTCAAGGGCGCAACACAGTTCACGCTGCGGCGTGGACGGTGGGACTTCACAAGCGGCAACTCCCGCATGACACGCATCGTGGTCCGCGCCGCCGGCGCCACTGACACGGTGAAGATCAGCGACCTGTCGATGCTGAACAAGACCACAGCCCCGTACGACACGATCACATCGGCGTCGTTCGTGGACTGGTCGGCCGGGTTCGAACTGTCCTCGGTCGTCATGGCATCTCAGGCGTCGATCGAGGACGCAGCGAAACTGGCCACGATCGCGAACACTCGCGCCGAGGTCGTGAAGCTGCAGCTGTACTCGAACACCAGCCCGTACACGCTGGCCGCCCTGCCCGCTGGCATGTTCCGTGGGCAGATGCTGGTGATGTTCACGCTGGCGAACACAAACCAGACGATCACGATCCCGAACGACGCGGCGAAGAAGATTCTGACCGCCTCTGGTTCGAGCATCGCGTTGACCGGCACCAGTTTGCCGATCTCGTTCGTGTGGAACGGCACCAATTGGATGCAGACGGCCAACGTGTAG

Tertiary structure

PDB ID
eb3b11afb531bcf8d720e0019c00cd302e66c1353e23ab418dac6e08fe7652a4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8813
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Rhodococcus bacteriophage ReT1v-2 Suzuki,Y., Kubota,H., Ishitsuka,T., Takai,S. and Kakuda,T. 2015-04-30 — GenBank