Phage RBP Database

Genbank accession

YP_009851271.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,85

Protein sequence

MSSTNQIGYAYAGTKAMMPYLGSGYIAGEAPPPLVPEHPDGRTYVNYELKPLTVKVLHADSFTPMAEVRSLADGTWRIDGLNPSMRYQVIFQNDNYRDSSDVLYNSAIQDWIGAVPVAYTPPDDALRLATPLAMERWAMPTSIQAYSVNGGLLTVPTFSGTFSGVTVEANKSNVTVNLRPVQAVGTYTLQVSAVKDSQTINSNVCSFRIRPQQVDTQQFIRFALLGTTPGPASVTSTWARCVIGNGGLTGGTFVADADALSPDYPVSLNSDWSTDIISGNMYNDGAGNWVSLNNGYNNGFIVEGWFSVSSWPTTDTAMLTSIKTSLAASSLFGLTLRPDKRIGTIMKYGSTNSARFENVGEVQYTLPTNEWFHILVHVLPSQQLGYLYVNGQYTDRWPMIKNNTVPTNTNMNVGYVTFMCNNDQGCTGTAVAKCNRVVWLESRFSNPNFTPSKTKYHEWQATVQCATYGVNGNAVNEMSSCEGTWSTTGNVSSRPVFDPVEGVVFPNTTATDGYAYMNFQRGYGGVRGSLCLDVWFKPLTAYNGDKNIIQVGNPSSSDGRVHIALNNGKLKAYGCPYTTSTAVTLNGTTVLNNNQWYLATLCCDVIQREWRLYLDGALEASISDPNLAPLATPAVSSMTNIILGGRHPLSSASGTIPSFHGIIGATRLTINGPRYYSNFTPVGIGAWDALPARPAA

Physico‐chemical properties

protein length:	696 AA
molecular weight:	75463,90800 Da
isoelectric point:	6,09487
aromaticity:	0,10345
hydropathy:	-0,16624

Domain architecture

YP_009851271.1

1 696 aa

STR 248–430 · STR 466–668 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.60.120.200
STR

G3DSA:2.60.120.200 IPR013320

IPR013320
STR

IPR013320 PF13385

G3DSA:2.60.120.200
STR

G3DSA:2.60.120.200

YP_009851271.1

1696 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0739
ATT

DC_0739

YP_009851271.1

1696 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.60.120.200	STR	G3DSA:2.60.120.200	248	430	Merged direct domain	G3DSA:2.60.120.200	Central	Low	Positional only	153 proteins / 153 hits
IPR013320	STR	IPR013320	284	416	Merged direct domain	Concanavalin A-like lectin/glucanase domain superfamily	Central	Low	Positional only	237 proteins / 237 hits
IPR013320	STR	IPR013320	466	667	Merged direct domain	Concanavalin A-like lectin/glucanase domain superfamily	Central	Low	Positional only	237 proteins / 237 hits
PF13385	LEC	DC_0004	515	630	InterPro cluster	PF13385	C-terminal	Medium	Text match	334 proteins / 417 hits
G3DSA:2.60.120.200	STR	G3DSA:2.60.120.200	527	668	Merged direct domain	G3DSA:2.60.120.200	Central	Low	Positional only	153 proteins / 153 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009851271.1

1 696 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	15	15	0,9001
Central domain	16	281	267	0,3910
C-terminal	282	696	414	0,7370

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Stenotrophomonas phage Mendera [NCBI] · taxon 2650877

Uroviricota Caudoviricetes Menderavirus

Host

Stenotrophomonas maltophilia [NCBI] · taxon 40324

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales

Genbank protein accession

YP_009851271.1 [NCBI]

Genbank nucleotide accession

NC_048804 [NCBI]

CDS location

range 125289 -> 127379
strand +

CDS

GTGAGTAGCACAAATCAAATCGGATATGCTTATGCTGGCACGAAAGCCATGATGCCCTATCTTGGCTCTGGATACATTGCGGGTGAGGCTCCGCCTCCTTTGGTACCAGAACATCCAGACGGCAGAACCTACGTCAACTATGAGCTAAAGCCTCTGACTGTCAAGGTCTTGCATGCCGACTCATTTACGCCTATGGCTGAGGTAAGATCGCTAGCGGATGGAACCTGGCGCATTGACGGATTGAACCCATCTATGCGGTATCAAGTCATCTTCCAGAACGACAACTACAGAGATAGCAGTGATGTTCTGTACAATTCGGCAATCCAAGATTGGATCGGAGCCGTTCCAGTCGCATACACGCCGCCAGATGATGCCCTGCGACTGGCTACACCTTTGGCTATGGAGAGATGGGCTATGCCAACAAGCATCCAGGCATACTCCGTCAATGGTGGATTGTTGACCGTGCCGACTTTCTCTGGAACCTTTTCTGGTGTGACTGTAGAAGCCAACAAGTCCAATGTGACAGTGAATCTACGTCCCGTTCAAGCTGTGGGAACATACACTTTGCAGGTGTCGGCTGTCAAAGATAGCCAGACCATCAATAGCAATGTGTGCTCGTTTAGGATCAGGCCTCAGCAGGTGGACACGCAACAGTTCATCCGCTTCGCTTTGCTCGGAACGACACCCGGACCAGCTAGCGTCACATCCACCTGGGCTAGATGTGTCATCGGTAATGGAGGCTTGACAGGAGGAACATTTGTCGCAGACGCAGATGCCTTGTCTCCAGACTATCCGGTCTCTTTGAATAGTGATTGGTCCACGGATATCATCAGCGGTAACATGTACAATGATGGTGCCGGTAACTGGGTCTCGCTGAACAACGGATACAACAATGGCTTCATTGTCGAAGGATGGTTCAGCGTCTCTTCATGGCCAACTACCGATACAGCCATGCTTACCTCCATCAAGACCTCGCTTGCGGCGTCGTCGCTGTTTGGGCTGACGCTTCGCCCAGATAAGCGCATCGGGACAATCATGAAGTATGGTTCAACAAACTCCGCGCGGTTCGAGAATGTGGGTGAGGTGCAGTATACGCTACCAACCAACGAGTGGTTCCATATCCTTGTGCATGTGCTGCCTAGCCAGCAGCTAGGCTATCTGTATGTCAATGGGCAATACACAGATAGATGGCCCATGATCAAGAACAACACCGTTCCGACTAACACCAACATGAATGTTGGCTATGTCACATTTATGTGCAACAATGATCAGGGCTGCACTGGTACAGCCGTTGCCAAATGCAACCGTGTGGTGTGGTTGGAAAGCCGCTTCTCCAACCCTAACTTCACTCCATCCAAGACCAAGTACCATGAGTGGCAAGCTACTGTCCAGTGCGCCACCTATGGAGTCAATGGCAATGCGGTAAACGAGATGAGTTCTTGCGAAGGAACATGGTCAACAACAGGCAATGTATCATCTCGTCCTGTGTTTGATCCAGTCGAGGGTGTGGTGTTCCCAAACACCACAGCCACTGATGGATACGCTTACATGAACTTTCAGAGAGGATATGGGGGCGTTCGTGGCTCTCTGTGTCTGGATGTGTGGTTCAAGCCACTCACTGCATACAATGGCGACAAAAACATCATCCAGGTGGGTAATCCTAGTTCATCTGATGGACGTGTGCATATCGCATTGAACAATGGCAAGCTGAAAGCGTATGGATGCCCCTATACGACATCAACAGCTGTCACCTTGAATGGAACGACAGTACTGAACAACAACCAGTGGTATCTGGCCACCTTGTGTTGCGATGTTATCCAGCGCGAGTGGAGACTCTATCTAGATGGCGCGCTTGAGGCTAGTATCTCAGATCCCAATCTAGCACCTCTGGCGACTCCAGCTGTCTCATCTATGACCAATATCATCTTGGGTGGTCGTCATCCATTGAGTAGCGCTAGTGGCACGATCCCATCATTCCATGGCATCATCGGCGCAACACGATTGACTATCAATGGCCCTCGCTACTACTCCAACTTTACACCTGTTGGCATCGGCGCATGGGATGCACTGCCAGCTCGCCCAGCGGCTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)