Phage RBP Database

Genbank accession

XMN01142.1 [GenBank]

Protein name

tail protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 1,00

Seq2Symm

C3 confidence 1,000

C3	1,000
C6	0,000
D2	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MLIQQGFSGLSRALRRPIGKDYFDAENRRISNVSDPVLSQDAVTRKWSEEYFSDLISDIQGPVNNAQNVLYVDGDGISTTVQKGIIKQFTSVSDVRGKAGDKDGDQAVLLGYYQDSPGVGGGNLYWDSLSVEPDNGGSVFAVTGVPNGRWKRDITHGVWAEWFGARNDGSDAAGTTAAVWAAIIALRHDPETIVQYIGGPTVTAYASGRLNFGSGVFALQPDSFDITQDLGLTIVGQGFRGKNQAMKAATTLLCKGVSSGFFFRHYGNGARNLTFKDMDVVYENSDFTGDIVESLTSPGLTLERTRLGCYGGLLGTRVQTARSCIRPTFDEFLRCEDVVFDGAQNGFWSDGARTIPGLSFGGWGTTLINCTFYDLANSMIHHAANRGRSIVNVIGCAFNPINISPARCFDITNIEGINVTGNQFTPSTGSQPTQEWIRLLGSTGAIDGNTFSGPSSKLGTIGGVDPSSIRFSNNRVSCQGGLVVSGGIFTGSGNEYSIADHGVDVSPVAITTLDIGPDIFKSGVSGNSYRISADSSLLGGRINYIFEQDNSNSKFSNVSSRVSIDNVDRRISTIGSLPSTASPYFSGRTYNVTVAGTFTLPTPIPGIRLRVMKSTATALTVSTTSGSNILVGASSARTSAVATAAEIGPAIEFVAFSSASWVAQVLSGSWSFS

Physico‐chemical properties

protein length:	673 AA
molecular weight:	71382,62850 Da
isoelectric point:	5,53631
aromaticity:	0,09361
hydropathy:	-0,08752

Domain architecture

XMN01142.1

1 673 aa

RBD 88–154 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR059934
RBD

IPR059934

XMN01142.1

1673 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0717
ATT

DC_0717

DC_0743
STR

DC_0743

XMN01142.1

1673 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR059934	RBD	DC_0541	88	154	InterPro cluster	Phage tail protein-like, small four-stranded beta-sheet domain	C-terminal	Low	Positional only	683 proteins / 690 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XMN01142.1

1 673 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	175	175	0,9929
Central domain	176	547	373	0,9905
C-terminal	548	673	125	0,9040

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pseudomonas phage Flu_PA14_3 [NCBI] · taxon 3390415

Viruses

Host

Pseudomonas aeruginosa PA14 [NCBI] · taxon 652611

Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas

Genbank protein accession

XMN01142.1 [NCBI]

Genbank nucleotide accession

PQ287281 [NCBI]

CDS location

range 16660 -> 18681
strand +

CDS

ATGCTGATTCAGCAGGGATTTTCAGGTCTTTCAAGGGCCTTGAGGCGCCCAATAGGTAAAGACTACTTTGACGCCGAAAATCGAAGAATCTCTAATGTCTCCGATCCTGTGCTTTCGCAGGATGCAGTAACCAGAAAGTGGTCCGAGGAATACTTTTCTGATTTGATCAGTGATATTCAGGGTCCGGTAAACAATGCACAGAATGTGCTTTATGTAGATGGTGACGGAATATCAACTACTGTTCAGAAGGGGATTATAAAACAATTCACTTCTGTCTCTGATGTAAGAGGGAAAGCAGGGGACAAGGATGGAGATCAAGCTGTCCTTCTAGGGTACTATCAAGACTCGCCTGGAGTTGGGGGCGGGAATCTGTACTGGGACTCTCTCTCTGTAGAGCCAGATAATGGCGGATCGGTCTTTGCTGTTACCGGGGTTCCAAATGGTCGCTGGAAGCGCGATATAACGCACGGCGTGTGGGCCGAATGGTTCGGCGCTCGCAATGATGGTTCTGATGCTGCGGGAACTACTGCTGCGGTGTGGGCTGCAATCATCGCACTCCGGCACGACCCGGAGACGATCGTGCAGTACATCGGCGGTCCCACTGTCACAGCGTATGCATCCGGGCGACTGAACTTCGGCAGCGGGGTCTTTGCACTCCAGCCTGATAGTTTCGATATTACCCAGGACCTCGGCCTGACCATCGTCGGGCAGGGATTCAGAGGTAAGAACCAGGCGATGAAGGCGGCTACCACGTTGCTCTGCAAGGGAGTTTCAAGTGGATTTTTCTTCCGCCACTACGGGAATGGCGCCCGTAATTTGACATTCAAAGATATGGATGTCGTATATGAGAACTCGGATTTCACTGGAGATATAGTTGAGAGCCTGACATCTCCCGGCTTGACGCTTGAGAGGACTAGGCTTGGCTGCTATGGAGGCCTTCTTGGAACTCGCGTTCAAACCGCGAGAAGCTGTATCCGACCAACTTTCGACGAATTTTTGCGTTGCGAAGACGTTGTGTTTGATGGCGCTCAGAATGGCTTTTGGTCAGATGGTGCGCGGACAATTCCAGGTCTGTCTTTTGGTGGCTGGGGTACGACCCTTATAAACTGTACGTTCTATGATCTTGCCAATTCCATGATACATCACGCGGCTAATAGAGGTAGAAGTATTGTTAATGTAATTGGGTGTGCGTTCAATCCTATCAATATAAGTCCTGCTAGGTGTTTTGACATTACCAACATTGAGGGAATCAATGTGACCGGAAATCAATTTACACCAAGCACGGGAAGCCAGCCAACGCAAGAATGGATTAGGCTTCTAGGTAGCACTGGCGCTATAGATGGGAATACGTTTTCAGGCCCATCCTCAAAGCTCGGAACCATTGGAGGCGTAGATCCTTCGTCAATCAGGTTCTCTAACAATAGGGTATCCTGCCAAGGTGGTCTTGTAGTATCCGGAGGAATTTTTACAGGCTCTGGAAACGAATATTCTATAGCTGATCATGGAGTTGACGTATCGCCAGTGGCTATTACTACTCTTGATATTGGTCCTGATATTTTCAAGTCTGGAGTATCTGGGAACTCATATCGCATCTCTGCGGATAGCTCCCTTCTTGGCGGGAGAATTAACTACATATTTGAGCAGGATAACTCAAATAGTAAGTTTTCAAATGTTTCCTCAAGGGTCTCAATTGATAATGTTGATAGGAGAATATCTACTATAGGCTCTCTCCCATCTACCGCGTCTCCGTATTTTAGCGGAAGAACCTATAATGTTACCGTTGCGGGTACATTCACATTGCCCACTCCAATTCCGGGAATTAGATTGAGAGTAATGAAAAGCACAGCGACGGCACTGACAGTATCTACCACATCCGGCTCGAATATTCTTGTCGGTGCCAGTTCGGCAAGAACCTCTGCCGTTGCGACAGCCGCCGAGATTGGGCCAGCAATTGAGTTTGTTGCTTTTAGCTCTGCATCATGGGTGGCGCAAGTCCTGTCAGGGTCTTGGTCATTCAGCTAG

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)