Phage RBP Database

Genbank accession

AMO43045.1 [GenBank]

Protein name

short tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,85

Protein sequence

MPVYNFSTTPLYVAEGQTVQFRYEAPDTFDTLEQIEIQIGELTVFWIIETTKEDFSPDPFDLQDINPAELDVVYSYAETEEGPDAAPFGGGSSFNPLRTGEEVITIGGLSDGTQAPITISSNVQNAADYAYRIRTNPVAQWGAWTTGDNKPAATQFVSNGDQIQVRLKASAAPADEKRVTVTIGTGEEAWRITTGAQPVNEPNPVPVFDPVNALELNTQVYSNIVQILGLNTDALIQIDKAGELRISSSNATTTEVIGTAEYQVLSSGTAWAASGTVTNGDYVQLRGTSSAASNADKIFSIDIGDGIGIAAWNTRTGDGVNTIPDNFIFQDLVEVVPGTTDIASTVSFGPTAPEDPNAALIQGLTDGISVPVVLRAAETTAINPRIKVNGGSSGTFSNVSVQNGDYIQLIVDADPDLSVAPTTESVQVAINVGDRVITAWSVTNWFGPDEIPAFVQPTNLQNQTPGGFAVLGPIGMTDFNTAITISTTSPVAYDNGGTATGEALGSEVLISINGDAAVAGPRTAQPDNTGNPVTVTFFIPQPGDADADPVEGLSHYSEFDISLGLAPTFTFRSFNYAVKPVPPSYQGVWYSNKNEFFDEAAYEAAGSPVVNASSYYRASKLDGYSTGTVLPVTKESINGYGDLEERFPGFLECDGTSYNAADYPFLFDVIGTQYGFDTAGGEGEYDETNKQYTGTFRVPDYRNRRLTGAGIVDGNRGSSAFLEADVGSYEIPGSTGGWWYVSDVDVAGPDPLEQVITTPGSNTGTESIFFELGTPKTFGTETLITEVPFNVTGQVNAIIGPVSEKTVQVPTHEHFVVTGIPEDISGDPVIPWDTRAYYGTQGSGQRGPSSQGPDEPAVSRVSSWWRGMDALNAGVFDQELGRTFGPPQKVDDYLPLGPEGASTTASFGNYWSSPIGPLENLSPRDSYFQVNSGSPTDAAVIDSKEALVRIDEYQNPNELYSHTHLLGTDVVGDPNLDFSYGNANSFGGLRAGLPNFSNSVEMIFNQSDVVIELNEAEFSWNNSTRPIPTVAMDPTRKVPILAPFHKIKYIIKAY

Physico‐chemical properties

protein length:	1054 AA
molecular weight:	112588,32510 Da
isoelectric point:	4,12466
aromaticity:	0,09867
hydropathy:	-0,23700

Domain architecture

AMO43045.1

1 1054 aa

ATT 620–702 · STR 703–727 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR037053
ATT

IPR037053

IPR011083
ATT

IPR011083

SSF88874
STR

SSF88874

AMO43045.1

11054 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0346
STR

DC_0346

AMO43045.1

11054 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR037053	ATT	IPR037053	620	702	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	648	679	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
SSF88874	STR	SSF88874	649	727	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AMO43045.1

1 1054 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	674	674	0,8328
Central domain	675	895	222	0,7182
C-terminal	896	1054	158	0,3931

Note: Constraints were applied during segmentation.
Fixed 40 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Cyanophage S-RIM32 [NCBI] · taxon 1278479

Uroviricota Caudoviricetes Pantevenvirales Bristolvirus Bristolvirus rhodeisland

Host

Synechococcus sp. [NCBI] · taxon 1131

cellular organisms Bacteria Bacillati Cyanobacteriota/Melainabacteria group Cyanobacteriota Cyanophyceae

No CDS data available.

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)