Protein

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Genbank accession
YP_009044689.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDLKKWQDPLMNSELQQDYNDNLVKLAGSLEKANQDMTHVNQRISNLVIKSGGDESNEVVDARVSSLVPETEFTTLNDRINYAENALITGVGKLSTNVYDLMDKYNDIDTILKRLYGLDSSNIEIFVDDARGDDVTGTGEIDAPFKTINKAVMTLPRVLNSNSVNIWIVPGRYNEDVVIPPIMGGDIYIRSTNFETVDPSSSTGCQVRSISATGSNGYLYIAGLEETNTAGTTKNYFIKATRCGFVRITKCRMAFNTKAIDPFTAVFIDACSADVNGCYFASQNVDVRGYNTARVEVQNTTHGAKSAIGLYPQSADIFNLNSGTWEADTPTKLSGGGVVRT
Physico‐chemical
properties
protein length:341 AA
molecular weight: 37302,28360 Da
isoelectric point:4,77683
aromaticity:0,07918
hydropathy:-0,28651

Domains

Domains [InterPro]
DC_1253
STR
1–335
DC_1253
Coil
Unmapped
30–50
Coil G3DSA:3.30.1910.20
IPR011050
STR
124–304
IPR011050
YP_009044689.1
1 341
Architecture
STR
STR 1-335 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009044689.1
1 341
Domain Start End Length (AA) Confidence
N-terminal 1 159 159 0,9004
Central domain 160 330 172 0,9516
C-terminal 331 341 10 0,7045
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-159
Central
160-330
C-terminal
331-341

Taxonomy

  Name Taxonomy ID Lineage
Phage Listeria phage LP-030-3
[NCBI] 		1458852 Uroviricota > Caudoviricetes > Aquingentivirus >
Host Listeria monocytogenes
[NCBI] 		1639 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales
Host Listeria monocytogenes serotype 4b str. F2365
[NCBI] 		265669 Bacteria > Firmicutes > Bacilli > Bacillales > Listeriaceae > Listeria

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009044689.1 [NCBI]
Genbank nucleotide accession
NC_024384 [NCBI]
CDS location
range 25162 -> 26187
strand +
CDS
ATGGATTTAAAAAAATGGCAAGACCCGCTCATGAACTCAGAACTACAGCAAGACTATAACGACAATTTAGTAAAACTAGCTGGAAGCCTTGAAAAAGCTAATCAAGATATGACGCATGTAAATCAACGTATATCTAACTTAGTTATTAAATCCGGCGGAGACGAATCGAACGAAGTAGTAGATGCGCGCGTTTCTTCTCTGGTTCCAGAAACTGAATTTACAACATTAAACGATAGAATTAATTACGCGGAAAATGCTTTGATAACAGGCGTTGGAAAGCTTTCAACGAATGTTTATGATCTAATGGATAAATACAACGATATAGATACTATTTTAAAGCGTTTATATGGCTTAGATAGCAGCAACATTGAAATATTTGTGGATGACGCAAGAGGCGACGATGTAACAGGCACTGGTGAAATTGATGCACCTTTTAAAACGATAAATAAAGCTGTAATGACTTTACCTCGAGTACTAAATAGCAACTCCGTGAACATTTGGATTGTCCCTGGACGCTATAACGAAGACGTTGTCATTCCGCCAATCATGGGCGGGGATATCTATATTAGATCTACAAACTTTGAAACAGTAGACCCTTCCAGCAGCACCGGATGCCAAGTTCGAAGTATTTCCGCAACAGGCAGTAACGGCTATTTATATATTGCTGGTTTAGAAGAAACGAACACGGCAGGCACAACAAAAAACTACTTCATTAAAGCGACGCGCTGCGGATTTGTAAGGATTACAAAATGCAGAATGGCTTTCAATACTAAAGCGATAGACCCGTTTACAGCCGTATTCATAGATGCTTGTTCTGCTGACGTTAACGGTTGTTACTTCGCTTCGCAGAACGTCGATGTTCGCGGTTATAACACTGCAAGAGTTGAAGTGCAAAACACCACACATGGAGCAAAAAGCGCAATCGGTTTGTATCCTCAAAGTGCCGATATTTTCAATCTCAATAGCGGCACCTGGGAAGCTGACACGCCTACGAAACTGAGCGGCGGGGGAGTTGTTAGAACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
54ea9dfb53458b5a3634468a84637d01426fff76dfd6982c73e485332f0988d0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8556
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50