Protein

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Genbank accession
XRM24778.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MTINKNTDLEFSLQQNTEKGGVYTNFYTEDKGSASIRIRLSNQGYYLDLTKIDLKPILFLFHDDGSIFEIKDFMNVMPEQGLIQYNFSDDVIRHAGKVKAKVFLKNDTKSVHVANFTFDIKDSGVEGAVGKEIKVELLEDIVRNVMTDNAMGLLDEDYKEKINQDIVNYVASNPDKYKGPQGPKGEQGIQGEQGIQGVKGDRGLQGIQGPKGENGKDSTQVNYRDVKIHADMPYKFKGYDTEKNISGISYFTPQGVALDDDYIYVLHDTSELANHVLVIYDRQGNYVTKYRVGLHGGENIHVEREGNKRYLYAKTTTEKLGKFDITELSNGNETTVQLTPEKEFSISLYTNFFRTREGWGIEARNMSTSGILKRDMITFYNDDFSVMKNYLTVSPSSAILYSDKPNNLMKKATKKQGLVLMNNNIYQTVGGNWNPERDINTEIYHLQGVQQLGPSGTIVGDYTYMPHDIFAYLESIGKQPAMIEHESAFNYKNKLFCLIIYKKASSIGSDTGGVLLVEYGATNKDVTMDNMGQPFIAPTSEYNPYKSNIGGSLYNEYTGEKLNNIKDIVKYMTDSYQNKIIFYSSNTKVNDYNDVLLPNGLKVVIENLNGFTFFVTYESNNPKVEKYILTYDGNGNYTWGTANQTPRYNGLNLLEINESLDIYSTNTTGIPSGVSASGWVETKVSITAKRIEYMPYNSPDRYVNTAYNGVWTGWKKVTAT
Physico‐chemical
properties
protein length:720 AA
molecular weight: 81231,15560 Da
isoelectric point:5,58371
aromaticity:0,11250
hydropathy:-0,55042

Domains

Domains [InterPro]
IPR018913
ATT
5–146
IPR018913 IPR008160 cd19958
G3DSA:2.60.40.3350
ATT
6–125
G3DSA:2.60.40.3350 G3DSA:1.20.5.320
DC_0539
STR
25–719
DC_0539
XRM24778.1
1 720
Architecture
ATT
STR
ATT 5-146 | STR 147-719 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRM24778.1
1 720
Domain Start End Length (AA) Confidence
N-terminal 1 225 225 0,9952
Central domain 226 631 407 0,8679
C-terminal 632 720 88 0,7143
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-225
Central
226-631
C-terminal
632-720

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage RQ1
[NCBI] 		3412444 Viruses >
Host Staphylococcus saprophyticus
[NCBI] 		29385 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRM24778.1 [NCBI]
Genbank nucleotide accession
PV344601.1 [NCBI]
CDS location
range 40412 -> 42574
strand -
CDS
ATGACAATCAACAAAAATACGGATTTAGAGTTTTCTTTACAACAAAACACCGAAAAAGGTGGAGTTTATACCAATTTCTATACAGAAGACAAAGGCAGTGCTTCTATTAGAATACGTTTATCGAATCAAGGGTATTACTTAGATTTAACAAAAATAGATTTAAAACCAATATTATTTTTATTTCACGATGATGGTTCTATATTTGAAATAAAAGATTTCATGAATGTTATGCCAGAACAAGGTTTGATACAATATAATTTTTCTGATGATGTAATAAGACATGCTGGTAAGGTTAAAGCAAAAGTATTTCTTAAAAATGACACTAAATCTGTTCATGTAGCTAATTTTACATTTGATATTAAAGACAGTGGTGTTGAAGGTGCTGTAGGAAAAGAAATAAAAGTTGAGTTATTAGAGGACATTGTTAGAAATGTCATGACTGATAACGCTATGGGATTATTAGATGAAGATTATAAAGAAAAAATTAATCAAGATATCGTTAATTATGTGGCAAGCAACCCAGATAAGTATAAAGGACCACAAGGACCTAAAGGGGAACAAGGTATACAAGGAGAACAAGGTATACAAGGTGTCAAAGGCGATAGAGGATTGCAAGGTATTCAAGGACCAAAAGGTGAAAACGGCAAAGATAGCACACAGGTAAATTATAGAGATGTAAAAATACATGCAGATATGCCCTATAAATTTAAGGGGTATGACACAGAAAAAAATATCAGTGGAATTTCATATTTTACTCCTCAGGGTGTTGCATTAGACGATGATTATATTTATGTATTACATGATACTTCTGAACTTGCTAATCATGTTTTAGTGATATATGACAGACAAGGAAACTACGTAACTAAATATAGAGTTGGTCTACATGGTGGAGAAAATATCCATGTAGAAAGAGAAGGAAATAAAAGATATTTATATGCAAAAACAACAACAGAAAAACTTGGAAAATTTGATATTACCGAATTAAGTAATGGCAATGAAACAACAGTTCAATTAACTCCAGAAAAAGAATTTTCAATATCTTTATATACTAACTTTTTCAGAACAAGAGAAGGCTGGGGAATAGAAGCTAGAAACATGTCTACATCAGGTATTTTAAAAAGAGATATGATAACTTTTTATAATGATGATTTTAGTGTTATGAAAAATTATTTAACGGTAAGTCCTTCAAGTGCCATATTATATTCAGATAAACCTAATAACCTTATGAAAAAAGCAACAAAAAAACAAGGACTAGTATTAATGAATAACAACATATATCAAACTGTAGGAGGAAATTGGAATCCAGAAAGAGATATTAACACGGAAATATATCACTTGCAAGGAGTTCAACAACTAGGACCATCTGGAACAATAGTTGGCGACTACACTTATATGCCACATGACATTTTTGCATATCTTGAAAGTATTGGTAAACAACCTGCTATGATAGAACACGAAAGTGCGTTCAATTATAAAAATAAACTTTTCTGTTTGATAATATATAAAAAAGCAAGTTCTATAGGTTCAGATACTGGTGGTGTTTTATTAGTAGAGTATGGTGCAACTAATAAAGATGTTACAATGGATAATATGGGTCAACCATTTATTGCTCCTACATCAGAATACAATCCATATAAATCTAATATCGGTGGAAGTCTTTACAATGAATATACTGGTGAAAAACTAAATAATATAAAAGATATTGTAAAATATATGACAGATAGTTATCAAAACAAAATTATTTTTTATTCATCTAACACTAAAGTGAATGATTATAATGATGTCTTACTACCTAATGGTTTGAAAGTTGTTATAGAGAATTTAAACGGTTTTACTTTCTTTGTTACTTACGAAAGTAATAACCCTAAAGTTGAAAAATATATATTAACGTATGACGGAAATGGAAATTATACATGGGGTACTGCTAATCAAACTCCTAGATATAATGGATTGAATCTACTTGAAATAAACGAAAGTTTAGATATATATTCTACTAATACTACAGGTATACCATCAGGAGTTTCAGCATCGGGTTGGGTAGAAACTAAAGTTAGTATTACTGCGAAAAGAATAGAGTATATGCCCTATAATTCTCCAGATAGATATGTTAACACAGCATATAATGGTGTATGGACAGGTTGGAAAAAAGTAACAGCGACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d8676543c9b66ee29041c559fe7a6ebc97806b4db7b82b0b6cc2a11ae5ef613c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6787
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50