Phage RBP Database

Genbank accession

XRM24778.1 [GenBank]

Protein name

tail spike protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,86

TSP

Evidence RBPdetect2

Probability 0,26

Seq2Symm

C1 confidence 0,997

C1	0,997
C2	0,001
I	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MTINKNTDLEFSLQQNTEKGGVYTNFYTEDKGSASIRIRLSNQGYYLDLTKIDLKPILFLFHDDGSIFEIKDFMNVMPEQGLIQYNFSDDVIRHAGKVKAKVFLKNDTKSVHVANFTFDIKDSGVEGAVGKEIKVELLEDIVRNVMTDNAMGLLDEDYKEKINQDIVNYVASNPDKYKGPQGPKGEQGIQGEQGIQGVKGDRGLQGIQGPKGENGKDSTQVNYRDVKIHADMPYKFKGYDTEKNISGISYFTPQGVALDDDYIYVLHDTSELANHVLVIYDRQGNYVTKYRVGLHGGENIHVEREGNKRYLYAKTTTEKLGKFDITELSNGNETTVQLTPEKEFSISLYTNFFRTREGWGIEARNMSTSGILKRDMITFYNDDFSVMKNYLTVSPSSAILYSDKPNNLMKKATKKQGLVLMNNNIYQTVGGNWNPERDINTEIYHLQGVQQLGPSGTIVGDYTYMPHDIFAYLESIGKQPAMIEHESAFNYKNKLFCLIIYKKASSIGSDTGGVLLVEYGATNKDVTMDNMGQPFIAPTSEYNPYKSNIGGSLYNEYTGEKLNNIKDIVKYMTDSYQNKIIFYSSNTKVNDYNDVLLPNGLKVVIENLNGFTFFVTYESNNPKVEKYILTYDGNGNYTWGTANQTPRYNGLNLLEINESLDIYSTNTTGIPSGVSASGWVETKVSITAKRIEYMPYNSPDRYVNTAYNGVWTGWKKVTAT

Physico‐chemical properties

protein length:	720 AA
molecular weight:	81231,15560 Da
isoelectric point:	5,58371
aromaticity:	0,11250
hydropathy:	-0,55042

Domain architecture

XRM24778.1

1 720 aa

ATT 5–146 · STR 178–232 · STR 692–718 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR018913
ATT

IPR018913 IPR008160 cd19958

G3DSA:2.60.40.3350
ATT

G3DSA:2.60.40.3350 G3DSA:1.20.5.320

XRM24778.1

1720 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0539
STR

DC_0539

XRM24778.1

1720 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR018913	ATT	DC_0557	5	146	InterPro cluster	BppU, N-terminal	Central	Medium	Text match	333 proteins / 333 hits
G3DSA:2.60.40.3350	ATT	G3DSA:2.60.40.3350	6	125	Merged direct domain	G3DSA:2.60.40.3350	N-terminal	Low	Positional only	41 proteins / 41 hits
IPR008160	STR	DC_0536	178	216	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	188	232	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
cd19958	STR	DC_0464	692	718	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XRM24778.1

1 720 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	225	225	0,9952
Central domain	226	631	407	0,8679
C-terminal	632	720	88	0,7143

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Staphylococcus phage RQ1 [NCBI] · taxon 3412444

Viruses

Host

Staphylococcus saprophyticus [NCBI] · taxon 29385

cellular organisms Bacteria Bacillati Bacillota Bacilli Bacillales

Genbank protein accession

XRM24778.1 [NCBI]

Genbank nucleotide accession

PV344601.1 [NCBI]

CDS location

range 40412 -> 42574
strand -

CDS

ATGACAATCAACAAAAATACGGATTTAGAGTTTTCTTTACAACAAAACACCGAAAAAGGTGGAGTTTATACCAATTTCTATACAGAAGACAAAGGCAGTGCTTCTATTAGAATACGTTTATCGAATCAAGGGTATTACTTAGATTTAACAAAAATAGATTTAAAACCAATATTATTTTTATTTCACGATGATGGTTCTATATTTGAAATAAAAGATTTCATGAATGTTATGCCAGAACAAGGTTTGATACAATATAATTTTTCTGATGATGTAATAAGACATGCTGGTAAGGTTAAAGCAAAAGTATTTCTTAAAAATGACACTAAATCTGTTCATGTAGCTAATTTTACATTTGATATTAAAGACAGTGGTGTTGAAGGTGCTGTAGGAAAAGAAATAAAAGTTGAGTTATTAGAGGACATTGTTAGAAATGTCATGACTGATAACGCTATGGGATTATTAGATGAAGATTATAAAGAAAAAATTAATCAAGATATCGTTAATTATGTGGCAAGCAACCCAGATAAGTATAAAGGACCACAAGGACCTAAAGGGGAACAAGGTATACAAGGAGAACAAGGTATACAAGGTGTCAAAGGCGATAGAGGATTGCAAGGTATTCAAGGACCAAAAGGTGAAAACGGCAAAGATAGCACACAGGTAAATTATAGAGATGTAAAAATACATGCAGATATGCCCTATAAATTTAAGGGGTATGACACAGAAAAAAATATCAGTGGAATTTCATATTTTACTCCTCAGGGTGTTGCATTAGACGATGATTATATTTATGTATTACATGATACTTCTGAACTTGCTAATCATGTTTTAGTGATATATGACAGACAAGGAAACTACGTAACTAAATATAGAGTTGGTCTACATGGTGGAGAAAATATCCATGTAGAAAGAGAAGGAAATAAAAGATATTTATATGCAAAAACAACAACAGAAAAACTTGGAAAATTTGATATTACCGAATTAAGTAATGGCAATGAAACAACAGTTCAATTAACTCCAGAAAAAGAATTTTCAATATCTTTATATACTAACTTTTTCAGAACAAGAGAAGGCTGGGGAATAGAAGCTAGAAACATGTCTACATCAGGTATTTTAAAAAGAGATATGATAACTTTTTATAATGATGATTTTAGTGTTATGAAAAATTATTTAACGGTAAGTCCTTCAAGTGCCATATTATATTCAGATAAACCTAATAACCTTATGAAAAAAGCAACAAAAAAACAAGGACTAGTATTAATGAATAACAACATATATCAAACTGTAGGAGGAAATTGGAATCCAGAAAGAGATATTAACACGGAAATATATCACTTGCAAGGAGTTCAACAACTAGGACCATCTGGAACAATAGTTGGCGACTACACTTATATGCCACATGACATTTTTGCATATCTTGAAAGTATTGGTAAACAACCTGCTATGATAGAACACGAAAGTGCGTTCAATTATAAAAATAAACTTTTCTGTTTGATAATATATAAAAAAGCAAGTTCTATAGGTTCAGATACTGGTGGTGTTTTATTAGTAGAGTATGGTGCAACTAATAAAGATGTTACAATGGATAATATGGGTCAACCATTTATTGCTCCTACATCAGAATACAATCCATATAAATCTAATATCGGTGGAAGTCTTTACAATGAATATACTGGTGAAAAACTAAATAATATAAAAGATATTGTAAAATATATGACAGATAGTTATCAAAACAAAATTATTTTTTATTCATCTAACACTAAAGTGAATGATTATAATGATGTCTTACTACCTAATGGTTTGAAAGTTGTTATAGAGAATTTAAACGGTTTTACTTTCTTTGTTACTTACGAAAGTAATAACCCTAAAGTTGAAAAATATATATTAACGTATGACGGAAATGGAAATTATACATGGGGTACTGCTAATCAAACTCCTAGATATAATGGATTGAATCTACTTGAAATAAACGAAAGTTTAGATATATATTCTACTAATACTACAGGTATACCATCAGGAGTTTCAGCATCGGGTTGGGTAGAAACTAAAGTTAGTATTACTGCGAAAAGAATAGAGTATATGCCCTATAATTCTCCAGATAGATATGTTAACACAGCATATAATGGTGTATGGACAGGTTGGAAAAAAGTAACAGCGACATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)