Phage RBP Database

Genbank accession

XRM24778.1 [GenBank]

Protein name

tail spike protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,86

TSP

Evidence RBPdetect2

Probability 0,26

Protein sequence

MTINKNTDLEFSLQQNTEKGGVYTNFYTEDKGSASIRIRLSNQGYYLDLTKIDLKPILFLFHDDGSIFEIKDFMNVMPEQGLIQYNFSDDVIRHAGKVKAKVFLKNDTKSVHVANFTFDIKDSGVEGAVGKEIKVELLEDIVRNVMTDNAMGLLDEDYKEKINQDIVNYVASNPDKYKGPQGPKGEQGIQGEQGIQGVKGDRGLQGIQGPKGENGKDSTQVNYRDVKIHADMPYKFKGYDTEKNISGISYFTPQGVALDDDYIYVLHDTSELANHVLVIYDRQGNYVTKYRVGLHGGENIHVEREGNKRYLYAKTTTEKLGKFDITELSNGNETTVQLTPEKEFSISLYTNFFRTREGWGIEARNMSTSGILKRDMITFYNDDFSVMKNYLTVSPSSAILYSDKPNNLMKKATKKQGLVLMNNNIYQTVGGNWNPERDINTEIYHLQGVQQLGPSGTIVGDYTYMPHDIFAYLESIGKQPAMIEHESAFNYKNKLFCLIIYKKASSIGSDTGGVLLVEYGATNKDVTMDNMGQPFIAPTSEYNPYKSNIGGSLYNEYTGEKLNNIKDIVKYMTDSYQNKIIFYSSNTKVNDYNDVLLPNGLKVVIENLNGFTFFVTYESNNPKVEKYILTYDGNGNYTWGTANQTPRYNGLNLLEINESLDIYSTNTTGIPSGVSASGWVETKVSITAKRIEYMPYNSPDRYVNTAYNGVWTGWKKVTAT

Physico‐chemical properties

protein length:	720 AA
molecular weight:	81231,15560 Da
isoelectric point:	5,58371
aromaticity:	0,11250
hydropathy:	-0,55042

Domain architecture

XRM24778.1

1 720 aa

ATT 5–146 · STR 178–232 · STR 692–718 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR018913
ATT

IPR018913 IPR008160 cd19958

G3DSA:2.60.40.3350
ATT

G3DSA:2.60.40.3350 G3DSA:1.20.5.320

XRM24778.1

1720 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0539
STR

DC_0539

XRM24778.1

1720 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR018913	ATT	DC_0557	5	146	InterPro cluster	BppU, N-terminal	Central	Medium	Text match	333 proteins / 333 hits
G3DSA:2.60.40.3350	ATT	G3DSA:2.60.40.3350	6	125	Merged direct domain	G3DSA:2.60.40.3350	N-terminal	Low	Positional only	41 proteins / 41 hits
IPR008160	STR	DC_0536	178	216	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	188	232	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
cd19958	STR	DC_0464	692	718	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XRM24778.1

1 720 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	225	225	0,9952
Central domain	226	631	407	0,8679
C-terminal	632	720	88	0,7143

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Staphylococcus phage RQ1 [NCBI] · taxon 3412444

Viruses

Host

Staphylococcus saprophyticus [NCBI] · taxon 29385

cellular organisms Bacteria Bacillati Bacillota Bacilli Bacillales

Genbank protein accession

XRM24778.1 [NCBI]

Genbank nucleotide accession

PV344601.1 [NCBI]

CDS location

range 40412 -> 42574
strand -

CDS

ATGACAATCAACAAAAATACGGATTTAGAGTTTTCTTTACAACAAAACACCGAAAAAGGTGGAGTTTATACCAATTTCTATACAGAAGACAAAGGCAGTGCTTCTATTAGAATACGTTTATCGAATCAAGGGTATTACTTAGATTTAACAAAAATAGATTTAAAACCAATATTATTTTTATTTCACGATGATGGTTCTATATTTGAAATAAAAGATTTCATGAATGTTATGCCAGAACAAGGTTTGATACAATATAATTTTTCTGATGATGTAATAAGACATGCTGGTAAGGTTAAAGCAAAAGTATTTCTTAAAAATGACACTAAATCTGTTCATGTAGCTAATTTTACATTTGATATTAAAGACAGTGGTGTTGAAGGTGCTGTAGGAAAAGAAATAAAAGTTGAGTTATTAGAGGACATTGTTAGAAATGTCATGACTGATAACGCTATGGGATTATTAGATGAAGATTATAAAGAAAAAATTAATCAAGATATCGTTAATTATGTGGCAAGCAACCCAGATAAGTATAAAGGACCACAAGGACCTAAAGGGGAACAAGGTATACAAGGAGAACAAGGTATACAAGGTGTCAAAGGCGATAGAGGATTGCAAGGTATTCAAGGACCAAAAGGTGAAAACGGCAAAGATAGCACACAGGTAAATTATAGAGATGTAAAAATACATGCAGATATGCCCTATAAATTTAAGGGGTATGACACAGAAAAAAATATCAGTGGAATTTCATATTTTACTCCTCAGGGTGTTGCATTAGACGATGATTATATTTATGTATTACATGATACTTCTGAACTTGCTAATCATGTTTTAGTGATATATGACAGACAAGGAAACTACGTAACTAAATATAGAGTTGGTCTACATGGTGGAGAAAATATCCATGTAGAAAGAGAAGGAAATAAAAGATATTTATATGCAAAAACAACAACAGAAAAACTTGGAAAATTTGATATTACCGAATTAAGTAATGGCAATGAAACAACAGTTCAATTAACTCCAGAAAAAGAATTTTCAATATCTTTATATACTAACTTTTTCAGAACAAGAGAAGGCTGGGGAATAGAAGCTAGAAACATGTCTACATCAGGTATTTTAAAAAGAGATATGATAACTTTTTATAATGATGATTTTAGTGTTATGAAAAATTATTTAACGGTAAGTCCTTCAAGTGCCATATTATATTCAGATAAACCTAATAACCTTATGAAAAAAGCAACAAAAAAACAAGGACTAGTATTAATGAATAACAACATATATCAAACTGTAGGAGGAAATTGGAATCCAGAAAGAGATATTAACACGGAAATATATCACTTGCAAGGAGTTCAACAACTAGGACCATCTGGAACAATAGTTGGCGACTACACTTATATGCCACATGACATTTTTGCATATCTTGAAAGTATTGGTAAACAACCTGCTATGATAGAACACGAAAGTGCGTTCAATTATAAAAATAAACTTTTCTGTTTGATAATATATAAAAAAGCAAGTTCTATAGGTTCAGATACTGGTGGTGTTTTATTAGTAGAGTATGGTGCAACTAATAAAGATGTTACAATGGATAATATGGGTCAACCATTTATTGCTCCTACATCAGAATACAATCCATATAAATCTAATATCGGTGGAAGTCTTTACAATGAATATACTGGTGAAAAACTAAATAATATAAAAGATATTGTAAAATATATGACAGATAGTTATCAAAACAAAATTATTTTTTATTCATCTAACACTAAAGTGAATGATTATAATGATGTCTTACTACCTAATGGTTTGAAAGTTGTTATAGAGAATTTAAACGGTTTTACTTTCTTTGTTACTTACGAAAGTAATAACCCTAAAGTTGAAAAATATATATTAACGTATGACGGAAATGGAAATTATACATGGGGTACTGCTAATCAAACTCCTAGATATAATGGATTGAATCTACTTGAAATAAACGAAAGTTTAGATATATATTCTACTAATACTACAGGTATACCATCAGGAGTTTCAGCATCGGGTTGGGTAGAAACTAAAGTTAGTATTACTGCGAAAAGAATAGAGTATATGCCCTATAATTCTCCAGATAGATATGTTAACACAGCATATAATGGTGTATGGACAGGTTGGAAAAAAGTAACAGCGACATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)