Phage RBP Database

Genbank accession

XTJ55674.1 [GenBank]

Protein name

tail fiber protein proximal subunit

RBP type

TSP

Evidence RBPdetect

Probability 0,53

TF

Evidence RBPdetect2

Probability 0,67

Seq2Symm

C3 confidence 0,967 truncated

C3	0,967
C1	0,316
D3	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSDLLKQHFRATNGLDAGGNKVINVALADRNVKTDGVSVEYVIQENTIQKYDPTRGYLTDFAVTYGRRIWIANKDIPKPAGDFNQANWTSLRVDPNWIYTVRKGEFEIQSGQFINVDSNAAGNATLLLPLAPDEGDTIVVRDIGGRPGYNGILIKAQDTGASIVFGESRLREVRLTRPYSQIMLTFSNGAWRASLTDFGDTAKMVVPNGIVPTQVQAGDNVVRRYTSNSEIFITLPLFANSNDIINFTDLDGTSPINHMTVRTFDPTISIGTPGQTEVQVRTSGTGFLVYDSIDKIWRIFENDLRTRVRIITSDVTLMPNEHISVFGTDNNTVKTINVTLPTDVAVGDTVTIAMNYMRKGQTVVIKASGGDTIASNLNLLQFPKRSEYPPDAAWVQSSSITFNGTTSYVPVLGLAYIEDKASGKSYWIVTESDPTVERVDAKDNTTRARLGVIALATQAQANAESNPEKELAITPETLNGRRSTETQTGIARIATSSEVNQSTTASYLDNVIVTPKKLNERAATETRRGLAEIATNAKMDAGTDDFTIVTPKKLLYRTTSDSRLGVIQLVKTGGAPNTTADRSSAGTGIFDHSDYKNAVTPKTLREYKATVNQSGIVWLATDSEVRNGTPASSNIPTVVTPESLHKKVATDGAIGLIQIATQTEVNAGGVTNKAVTPKTLNDRTATNNRTGIARFATPGAQGEFEAGTSSTVMVNPKLLFDKFANTDRIQVNTSSGLTITGNLWDHYTINIQEASTSQRGTTTLATAAEVRTGTDAKKIVTAAALHAKTATEGAIGLAQYATQAQVDAGTLSDRIVPPAYLKQTIQVTESWQATDSVRGTVRLSTGDGTWKGNDTNGSTLPDNGYASKGVAVSPYELNLTLKHYLPRLGKAYDTGMLGGQTPDKYARRDIAQTISGAWTFSQDTSFSNNISVKNVIYANGGEVKISPTADTGIVHVRFQNRDGSERGIIYAEPQTASAGNLKVRVKNGTGTTAASQTYTFGGNGTLEVPNEVSTKTLRSSGNAIVGGTVMVKDVQMLAVEGLNSIFGAQSQSAFIRSRDADTQIFAQDSTGSYPILTTKNYARLADGRYVKKAGDTMTGNLNINSSAIVITGSESWYVPTNETVIRQGSWTAEIKDATKLKGLRGYMVPIRTPIDPGNPSTLVVTGYEEKTAAGGVLTQVGVTTNNTYQLWTPYPPTTETADKRFAHTVWMRIYNPNLNKFDDWMRVFTSATPPTAADIGAPSSVSTQVKTLEVLEWIKLGPVKIWPDRPNQTLKFEWVGD

Physico‐chemical properties

protein length:	1281 AA
molecular weight:	138418,33170 Da
isoelectric point:	8,07694
aromaticity:	0,07182
hydropathy:	-0,32927

Domain architecture

XTJ55674.1

1 1281 aa

ATT 1127–1228 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR048391
ATT

IPR048391

XTJ55674.1

11281 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1986
ATT

DC_1986 DC_1209

XTJ55674.1

11281 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR048391	ATT	DC_0875	1127	1228	InterPro cluster	Long-tail fiber proximal subunit domain	C-terminal	Medium	Text match	795 proteins / 796 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XTJ55674.1

1 1281 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	843	843	0,8580
Central domain	844	1042	200	0,2324
C-terminal	1043	1281	238	0,6609

Note: Constraints were applied during segmentation.
Fixed 76 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage 15882-3-1 [NCBI] · taxon 3373938

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host No host information

Genbank protein accession

XTJ55674.1 [NCBI]

Genbank nucleotide accession

PQ537370 [NCBI]

CDS location

range 51773 -> 55618
strand +

CDS

ATGAGCGATTTACTGAAACAACATTTCCGTGCAACGAACGGCTTGGACGCAGGCGGAAATAAAGTTATAAATGTGGCACTTGCTGACCGCAACGTTAAAACCGACGGCGTCTCCGTCGAGTACGTTATTCAAGAAAACACTATCCAAAAATATGACCCGACACGTGGGTATCTCACTGATTTTGCTGTGACTTATGGACGTCGTATCTGGATTGCAAATAAAGATATTCCAAAGCCTGCTGGAGATTTTAACCAGGCGAATTGGACTTCTTTACGTGTTGACCCGAACTGGATTTATACCGTCCGTAAAGGAGAGTTTGAAATTCAATCTGGTCAGTTCATCAACGTTGACTCTAACGCTGCAGGTAATGCTACATTACTGCTTCCGTTAGCACCGGATGAAGGCGATACCATCGTAGTTCGTGATATTGGCGGGCGTCCTGGCTATAACGGAATCTTAATTAAAGCACAAGATACTGGTGCGTCTATCGTATTTGGTGAATCGCGTCTGCGTGAGGTAAGACTTACACGTCCGTATTCACAAATTATGCTTACGTTTAGTAATGGTGCATGGCGTGCGAGTTTAACAGATTTTGGCGATACTGCCAAGATGGTAGTTCCGAACGGGATTGTTCCGACGCAAGTTCAGGCAGGTGATAACGTAGTTCGTCGTTATACTTCCAACTCAGAGATTTTTATTACTCTGCCGTTGTTCGCTAATTCAAACGATATCATCAATTTTACTGACCTTGACGGTACATCGCCAATTAACCATATGACTGTGCGTACGTTTGACCCAACTATCTCAATTGGGACTCCTGGGCAAACAGAGGTTCAAGTACGTACTTCAGGCACCGGATTTTTGGTATATGACTCGATTGACAAAATCTGGCGTATTTTTGAAAATGATTTACGCACCAGAGTAAGAATAATTACTTCTGATGTTACTTTAATGCCTAATGAGCATATTTCTGTATTTGGCACAGATAACAATACCGTTAAAACAATTAACGTTACTTTGCCTACAGACGTAGCTGTTGGGGATACTGTCACAATCGCAATGAATTATATGCGCAAAGGACAGACTGTAGTAATTAAAGCTTCTGGTGGTGATACTATCGCTAGCAATTTGAATTTACTGCAATTTCCAAAACGTTCAGAGTATCCACCTGATGCAGCATGGGTGCAATCAAGCTCAATTACCTTTAACGGAACTACATCGTATGTTCCTGTTCTTGGGCTTGCATATATTGAAGATAAAGCATCCGGAAAAAGCTATTGGATTGTAACTGAATCTGACCCTACCGTAGAACGAGTTGATGCTAAAGACAATACAACTAGAGCCCGATTAGGTGTTATTGCTCTTGCTACGCAGGCTCAAGCTAATGCGGAGTCAAACCCAGAAAAAGAATTAGCAATTACGCCAGAAACCTTAAATGGACGTCGTTCTACTGAAACCCAAACTGGTATAGCAAGAATTGCAACTTCCAGCGAAGTTAATCAGTCAACAACTGCTTCTTACTTGGATAATGTAATCGTTACTCCTAAAAAGCTTAACGAAAGAGCTGCTACTGAAACTCGTAGAGGTTTAGCAGAGATTGCGACTAATGCTAAAATGGATGCAGGAACAGACGATTTTACAATTGTTACTCCTAAGAAGCTGCTTTATCGTACTACGTCGGATTCACGGTTAGGTGTTATTCAATTAGTAAAAACTGGTGGTGCTCCTAACACAACTGCTGATCGTTCTTCTGCTGGCACCGGTATATTCGATCATTCTGATTACAAAAATGCAGTTACTCCAAAAACTCTTCGTGAGTATAAAGCTACTGTAAACCAATCAGGAATAGTCTGGTTAGCAACTGATAGCGAAGTTAGAAACGGAACTCCTGCTTCTTCAAATATTCCTACGGTTGTTACACCAGAATCTTTGCATAAAAAAGTTGCTACTGATGGAGCAATTGGTTTAATCCAAATAGCTACACAAACTGAAGTTAATGCTGGCGGCGTGACTAATAAAGCAGTTACACCTAAAACATTAAATGACCGTACAGCAACTAACAATCGTACTGGTATTGCTCGCTTCGCGACACCTGGTGCCCAGGGTGAATTTGAAGCTGGTACTTCAAGTACAGTAATGGTAAACCCTAAATTACTGTTCGATAAATTTGCTAATACCGATCGTATCCAAGTTAATACTAGTTCTGGCTTAACTATTACTGGGAACCTCTGGGACCATTATACCATCAACATACAGGAAGCAAGTACTTCTCAAAGAGGTACAACCACTCTTGCTACTGCTGCTGAGGTTAGAACTGGAACCGACGCTAAGAAAATAGTTACTGCTGCCGCGTTACATGCTAAAACAGCAACCGAAGGAGCTATCGGTCTTGCTCAGTATGCTACACAGGCACAAGTTGATGCAGGCACATTAAGTGATAGAATTGTTCCTCCTGCTTACTTGAAACAGACTATTCAGGTAACAGAGTCATGGCAAGCTACAGACAGCGTTAGAGGGACCGTGAGGCTATCTACAGGCGATGGAACGTGGAAAGGTAATGATACCAATGGCTCAACTCTTCCGGATAACGGGTATGCCTCTAAGGGCGTCGCAGTGTCTCCGTATGAATTGAACCTTACACTGAAACATTACTTGCCTCGTCTCGGTAAAGCCTATGACACAGGAATGTTAGGTGGTCAAACACCAGACAAATATGCTCGTCGCGATATAGCGCAGACTATTTCTGGAGCTTGGACATTTAGTCAGGACACTTCATTTAGCAATAATATTTCTGTCAAGAATGTTATATATGCTAATGGTGGTGAAGTTAAAATTTCTCCAACTGCTGACACTGGAATTGTGCATGTTCGTTTTCAAAATAGAGACGGAAGCGAGCGTGGTATAATTTATGCTGAGCCTCAAACAGCTTCAGCCGGAAACTTAAAAGTTCGCGTAAAAAACGGAACAGGAACTACTGCTGCAAGCCAGACCTACACATTTGGCGGTAACGGTACGTTAGAAGTTCCTAACGAAGTGTCAACTAAAACTCTGAGGTCTTCTGGAAATGCAATAGTTGGCGGAACTGTTATGGTTAAGGACGTTCAGATGCTTGCTGTCGAGGGATTGAATTCAATATTCGGTGCCCAATCACAGTCCGCATTTATTCGTTCCCGTGACGCTGATACACAAATTTTTGCACAGGATTCAACTGGATCGTATCCAATTTTAACTACCAAAAACTACGCAAGATTAGCTGATGGCCGTTATGTCAAGAAAGCTGGTGATACCATGACCGGCAATCTTAACATAAATAGTTCTGCTATCGTCATTACGGGTTCTGAATCCTGGTATGTGCCAACGAATGAAACTGTAATAAGACAAGGTTCTTGGACTGCTGAAATCAAAGACGCTACTAAATTGAAAGGTCTTCGTGGTTATATGGTTCCAATCAGAACACCGATTGACCCTGGTAACCCAAGCACTTTAGTAGTGACTGGGTATGAAGAAAAAACTGCAGCTGGTGGTGTTTTAACTCAGGTTGGTGTAACTACAAACAATACTTATCAGCTTTGGACGCCTTATCCTCCGACAACCGAAACTGCTGATAAGCGTTTCGCGCATACTGTGTGGATGAGGATTTATAATCCAAACCTTAATAAGTTTGATGATTGGATGCGAGTATTTACATCTGCTACTCCTCCAACTGCAGCTGATATCGGAGCTCCGAGCTCAGTATCAACTCAGGTTAAAACCCTTGAAGTTTTGGAATGGATTAAGCTTGGTCCAGTTAAAATCTGGCCAGACCGTCCAAATCAAACTCTCAAATTTGAATGGGTAGGTGATTAA

Title	Authors	Date	PMID	Source
Phage training: Klebsiella pneumoniae	Burke,K.A., Filippov,A.A., Nikolich,M.P. and Peters,T.L.	1997-09	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature