Phage RBP Database

Genbank accession

GENB_2221f9a0d35d [GenBank]

Protein name

receptor binding protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,67

TF

Evidence RBPdetect2

Probability 0,91

Seq2Symm

C1 confidence 0,764

C1	0,764
I	0,012
C2	0,005

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAVTGPWVGSSAVVNTGQNWMGGAAQRLRMGIPFWMSNMIGRSVEVIHTLGADHNFNGQWFRDRCFEAGSAPIVFNITGDLVSYSRDVPLFFMYGDTPNEYVQLNIHGVTMYGRGGNGWAAGAIGASDGGVCIQNDIGGRLRINNGGAIAGGGGGGGGYSQANNWAGKYVCGGGGGRPFGLGGNNGARWPGGNASLTSPGAGGNTGTRYYAGGGGEVGQPGQYANPGAGYSTPPTSPGAAVAGSAPTWQNVGAIYGSRV

Physico‐chemical properties

protein length:	259 AA
molecular weight:	26190,63050 Da
isoelectric point:	8,84186
aromaticity:	0,10425
hydropathy:	-0,21197

Domain architecture

GENB_2221f9a0d35d

1 259 aa

ATT 1–40 · RBD 45–259

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR048291
ATT

IPR048291 IPR007932

GENB_2221f9a0d35d

1259 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_2135
STR

DC_2135

GENB_2221f9a0d35d

1259 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR048291	ATT	DC_0779	1	40	InterPro cluster	Phage tail fibre adhesin Gp38, N-terminal domain	N-terminal	High	Text match	530 proteins / 530 hits
IPR007932	RBD	DC_0283	45	259	InterPro cluster	Receptor-recognising protein Gp38	Central	High	Text match	553 proteins / 553 hits

Proteins with similar domain architecture

Phage

Shigella phage KNP5 [NCBI] · taxon 1871710

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Shigella sp. [NCBI] · taxon 625

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

No CDS data available.

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)