Protein

View in Explore
Genbank accession
YP_009845552.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,54
Protein sequence
MADVQTRPDNDIFASSAGTGELLPFGDLARGWGATLGYSEGIPPMEWFNFIGNRTDKGIHYILQQGVDVWVATETYPVGALVKVNADNMLYRCLVQNINMAPSANPTQWRPVLDLTAATAAARQVGKASGNIIQVGAFGLGGNAEVVTNANSITNDGIYQLPASGTGGPTNGVDTEILHINWDTQNASQWARTKGKRVIAMREKVNNTWGGWSYSYGPDNKPTASELGINQDFIPMDGSDSIRGNLGTIGWLHIARTTSDLLRAANSAGVGTVEYSGNIAGGTAVQELLTSVSVAANSNVITAARWGSVPMTHIQHILVSGGATQINMAVCRPGGIADRRTVALQVDGLNSRVTTTNSFILCENGVRVYSPNNPQPIDTSAGNVRGIRLGARIAAGVSESTFYPGHVMTGWRFGDKKELRGGTYWSAPLQYYIDGTWINVSNVS
Physico‐chemical
properties
protein length:444 AA
molecular weight: 47290,41250 Da
isoelectric point:6,31631
aromaticity:0,07883
hydropathy:-0,16779

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009845552.1
1 444
Domain Start End Length (AA) Confidence
N-terminal 1 192 192 0,7137
Central domain 193 391 200 0,0623
C-terminal 392 444 52 0,9994
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-192
Central
193-391
C-terminal
392-444

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SE13
[NCBI] 		2575325 Uroviricota > Caudoviricetes > Rosemountvirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009845552.1 [NCBI]
Genbank nucleotide accession
NC_048763.1 [NCBI]
CDS location
range 33317 -> 34651
strand +
CDS
ATGGCTGATGTACAAACAAGACCCGATAACGACATCTTCGCCAGCTCCGCGGGTACTGGTGAACTGCTGCCGTTCGGTGACCTAGCTCGAGGCTGGGGTGCTACCCTTGGCTACTCGGAAGGTATTCCTCCGATGGAGTGGTTCAACTTTATTGGTAACCGTACTGACAAAGGTATCCACTACATCCTACAGCAGGGTGTTGACGTATGGGTAGCAACTGAGACTTACCCGGTTGGGGCACTGGTTAAAGTTAACGCAGACAATATGCTGTACCGTTGTCTGGTGCAAAACATTAACATGGCACCATCTGCTAACCCTACGCAGTGGCGTCCTGTGCTTGACCTGACAGCTGCAACTGCTGCAGCACGTCAGGTTGGTAAAGCTTCAGGTAACATAATCCAGGTCGGTGCATTTGGTTTAGGTGGTAATGCTGAAGTTGTTACTAATGCTAACAGCATTACAAACGACGGTATTTATCAGCTTCCTGCGTCAGGTACCGGCGGACCTACTAACGGCGTTGATACTGAGATTCTGCACATCAACTGGGATACGCAGAATGCTTCGCAGTGGGCACGAACCAAAGGCAAGCGTGTAATTGCTATGCGCGAAAAGGTTAACAATACCTGGGGTGGCTGGTCATACTCTTACGGGCCTGACAATAAACCTACGGCCTCTGAGCTGGGTATTAATCAGGACTTCATCCCTATGGATGGTTCTGACTCAATCCGCGGCAACTTAGGTACTATCGGCTGGTTGCATATTGCACGTACTACTTCCGACTTGCTACGTGCTGCTAACTCAGCCGGTGTAGGTACTGTTGAGTATTCTGGTAACATTGCAGGCGGTACTGCTGTTCAGGAGTTACTGACTTCGGTTTCTGTTGCGGCTAACAGTAATGTTATCACTGCTGCACGCTGGGGTTCTGTACCTATGACTCATATCCAGCACATTCTTGTGTCTGGTGGTGCTACCCAGATTAACATGGCAGTATGTCGCCCTGGTGGTATTGCTGATCGTCGTACAGTAGCTTTGCAGGTAGATGGTCTTAACAGCCGAGTAACTACCACAAACAGCTTTATTTTATGCGAGAATGGTGTTAGAGTATATTCACCTAACAACCCGCAGCCTATCGATACTTCAGCCGGTAACGTTCGGGGTATTCGACTTGGTGCTCGTATTGCTGCTGGCGTATCCGAGTCAACGTTCTACCCTGGCCACGTAATGACAGGCTGGCGCTTCGGTGATAAGAAAGAGCTGCGTGGTGGCACATACTGGTCAGCGCCGTTACAGTACTATATCGACGGCACTTGGATTAATGTAAGCAACGTATCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1a5cdfde43275fdb292fea6add87245ee1d84b2b469037b82eb5231280be563c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6624
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Salmonella bacteriophage diversity and host specificity revealed by physiological characterization and whole genome sequencing Fong,K., Wang,S., Delaquis,P., Tremblay,D., Moineau,S., Levesque,R. and Goodridge,L. 2019-09-14 — GenBank