Protein

View in Explore
Genbank accession
AUR96835.1 [GenBank]
Protein name
pectin lyase fold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
TF
Evidence Phold
Probability 1,00
Protein sequence
MSCSEFPTIQTAKTFKLDAETQNEVVTSENDRTSPASDGKTKLTLKGFENQVDTLIAEGSQEITDAIESTIGKSYIGTWTQGVTTFTTMNEYSDFNGITYKPKSGVTLPYTAQTADPTTAPDNANVEPFSDVNSANLGGLSNYQAASVADMIAGMALGGHAIDHAVGQVWGIYGNWRVVSISSPMTQSNFEPIGHIIVRDFGAAGDGVADDTSPIVDAVQAAASYHRAGASLKSVTGIDGDIYLISGVIDITGASLDMYGSVIKLADNFQFGTAITFDGTGVVGGCTIAATIDGNRSNQSFNVKAMSIESLTSPLSDIRIRGNDCNTLLRVSGNTEKIDFNLKATTTEIVVNEENGTGEGDVTPDENRFNIFCDSCGTAYRRHNADSTSYVFIHSENAIGNNSYLIDVSGGSKVVKVGGMIRTPQNTMLFDALSVTLFLDNLVVFAPSTDGLRINNCQCINGTVHFNATAEPSSSAYGLVIGKSRYGGILNYTNIEKSPLATYGVRIGSGTSVSCDNLIFNASGLNLHLDIQFAKRCTFNLQDATLVNIGESSESNTIRLSSNFISDNNQLNNQQPVAGANKVFIDGSITNAVLNAYSYPTAGMEATLVRGSAGYTGAIYDGAAWKYPTYS
Physico‐chemical
properties
protein length:631 AA
molecular weight: 66891,37590 Da
isoelectric point:4,61671
aromaticity:0,08082
hydropathy:-0,12472

Domains

Domains [InterPro]
IPR012334
182–446
IPR012334
IPR011050
194–578
IPR011050
AUR96835.1
1 631
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.233.A._10N.261.51.E6
[NCBI] 		1881229 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR96835.1 [NCBI]
Genbank nucleotide accession
MG592597 [NCBI]
CDS location
range 17235 -> 19130
strand +
CDS
ATGAGTTGTTCAGAATTCCCAACAATACAAACGGCAAAGACTTTCAAGCTCGATGCTGAAACACAAAATGAGGTCGTTACATCGGAGAATGATCGCACATCACCAGCCAGTGACGGCAAGACAAAGCTGACACTTAAAGGTTTTGAGAATCAAGTTGATACGCTCATTGCAGAAGGCTCGCAAGAGATCACAGATGCGATAGAAAGCACTATCGGCAAGTCTTACATCGGCACATGGACACAGGGCGTTACTACATTCACAACAATGAATGAGTACTCTGATTTTAACGGCATTACTTACAAACCAAAGTCAGGCGTTACGCTTCCATACACAGCTCAGACGGCAGACCCAACGACCGCGCCAGATAATGCTAATGTTGAGCCGTTTAGTGATGTCAATAGTGCAAATCTTGGCGGCCTAAGTAACTACCAAGCAGCAAGCGTAGCAGATATGATTGCAGGTATGGCGCTGGGTGGTCATGCCATTGATCATGCTGTCGGACAAGTTTGGGGAATCTACGGAAATTGGAGGGTTGTCTCGATTAGCAGCCCAATGACTCAAAGCAACTTTGAACCAATAGGTCATATCATCGTTAGGGATTTTGGAGCGGCTGGGGATGGAGTTGCGGATGATACATCACCAATAGTAGATGCAGTTCAGGCCGCAGCAAGCTATCATCGCGCTGGAGCCTCATTAAAGTCTGTGACAGGAATTGATGGTGATATCTATTTGATATCTGGAGTTATTGATATTACAGGCGCATCGCTCGATATGTACGGCTCAGTGATAAAGCTGGCAGACAATTTTCAGTTCGGAACAGCAATTACTTTCGATGGAACCGGCGTCGTTGGTGGCTGCACTATAGCTGCAACGATTGACGGCAACAGAAGCAATCAAAGCTTTAACGTGAAAGCAATGTCGATTGAATCTCTAACTAGCCCATTGTCAGATATCAGAATAAGAGGTAATGATTGCAATACACTACTAAGAGTTTCTGGTAATACTGAAAAGATAGACTTTAACTTAAAGGCAACAACGACTGAGATTGTTGTTAATGAAGAGAACGGCACAGGTGAAGGTGATGTAACACCAGATGAAAACAGATTCAACATATTCTGTGACTCTTGCGGTACAGCGTATAGGCGGCACAATGCAGACTCAACAAGCTATGTTTTTATTCACTCAGAGAATGCAATAGGAAACAACTCATACCTTATTGACGTCTCTGGCGGATCTAAAGTCGTAAAAGTTGGTGGCATGATCAGGACTCCGCAAAACACAATGCTATTTGATGCACTTAGCGTTACGCTTTTCCTTGATAACCTTGTTGTGTTCGCACCATCAACTGACGGCTTAAGAATAAATAATTGCCAGTGTATTAATGGCACAGTGCATTTTAACGCTACAGCGGAACCTAGCTCAAGCGCTTACGGGCTAGTTATTGGAAAGTCGAGATACGGCGGAATACTAAACTACACAAACATTGAAAAGTCACCACTAGCGACCTACGGAGTGAGGATTGGATCTGGCACATCAGTATCATGTGATAATTTAATATTTAACGCCTCCGGTTTAAATCTTCACTTGGACATCCAATTTGCCAAAAGGTGCACTTTTAACCTTCAAGATGCGACATTGGTAAATATCGGTGAATCATCTGAATCTAACACAATCCGACTAAGCAGCAACTTCATATCCGATAACAACCAACTTAACAACCAGCAACCAGTAGCAGGTGCAAACAAGGTTTTTATTGATGGATCTATTACAAATGCAGTTCTAAACGCATACTCATACCCAACCGCAGGGATGGAGGCCACCCTTGTTCGCGGCAGCGCTGGATATACCGGGGCAATATATGATGGTGCAGCATGGAAATACCCAACGTACTCATAA

Tertiary structure

PDB ID
47ee4bbca57e631d626e601626edaa7181f8e90812e29ed7d111b83d30b7a5f0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8332
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank