Protein

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UniProt accession
A0A219VHP1 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MVYDKHEWQDGELITSGKLNHMELGIQLADKQVSVKDYGAVGDGVADDTKSFINAFSENKGTKVIIPTGTYLITKQVSIFGDVEFQNAKVISTNNSQDYMFNVDGLDEINIIGFKYNNDNGRGAIKISNTKTVRLTSFDISGYSAETDYHKTDSALMLDNNTTIYLDDIKVHDHGFQYGAELEHLNRCISIQGDKTKTVIARGLQFSKANQGLVLSTPNGNVIVSDSSIDNTTDNSMYLLACLTFMATNVRFDDYYDESVIMGSGDYSFTNCWFSNVPNKVFGINNDTVGLSIIGCNIIQSDKHSGQIVSFRDVNYTLNTFIFESNRIVTAPDSTNNDLFYLGQINLFSIKNNTIKTFSISNGRNMFAFRNSDSNAPYTGVIKDNYVMPITKDVVIGTYYFARLYKEVGKVEISDNYISNGRMPMDNASVIYNGQKVFTSLGYVIDRTTRQSLYATTIPIKGRFNIGDVVYNTDPSNGVFAWVRVTTGLNNVSGVDWKTVSVN
Physico‐chemical
properties
protein length:503 AA
molecular weight: 55960,94330 Da
isoelectric point:5,17334
aromaticity:0,10934
hydropathy:-0,25308

Domains

Domains [InterPro]
DC_2249
ATT
5–170
DC_2249 DC_2129
IPR012334
STR
24–458
IPR012334
IPR011050
STR
28–290
IPR011050
IPR024535
ENZ
33–233
IPR024535
A0A219VHP1
1 503
Architecture
ATT
STR
ATT 5-170 | STR 171-503
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A219VHP1
1 503
Domain Start End Length (AA) Confidence
N-terminal 1 49 49 0,9772
Central domain 50 430 382 0,9899
C-terminal 431 503 72 0,9357
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-49
Central
50-430
C-terminal
431-503

Taxonomy

  Name Taxonomy ID Lineage
Phage Leuconostoc phage CHB
[NCBI] 		1897737 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
3df05e510eabacaf238f21195220be108e7965acaaae903735936cd2ce0f42e0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7870
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
— — 28651078 PubMed