Protein

Literature-linked
View in Explore
UniProt accession
A0A219VHP1 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 1,00
Seq2Symm
C3 confidence 1,000
C3 1,000
C1 0,002
D3 0,001
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MVYDKHEWQDGELITSGKLNHMELGIQLADKQVSVKDYGAVGDGVADDTKSFINAFSENKGTKVIIPTGTYLITKQVSIFGDVEFQNAKVISTNNSQDYMFNVDGLDEINIIGFKYNNDNGRGAIKISNTKTVRLTSFDISGYSAETDYHKTDSALMLDNNTTIYLDDIKVHDHGFQYGAELEHLNRCISIQGDKTKTVIARGLQFSKANQGLVLSTPNGNVIVSDSSIDNTTDNSMYLLACLTFMATNVRFDDYYDESVIMGSGDYSFTNCWFSNVPNKVFGINNDTVGLSIIGCNIIQSDKHSGQIVSFRDVNYTLNTFIFESNRIVTAPDSTNNDLFYLGQINLFSIKNNTIKTFSISNGRNMFAFRNSDSNAPYTGVIKDNYVMPITKDVVIGTYYFARLYKEVGKVEISDNYISNGRMPMDNASVIYNGQKVFTSLGYVIDRTTRQSLYATTIPIKGRFNIGDVVYNTDPSNGVFAWVRVTTGLNNVSGVDWKTVSVN
Physico‐chemical
properties
protein length:503 AA
molecular weight: 55960,94330 Da
isoelectric point:5,17334
aromaticity:0,10934
hydropathy:-0,25308

Domains

View on InterPro
Domain architecture
A0A219VHP1
1 503 aa
STR 24–458 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
A0A219VHP1
1 503 aa
Domain Start End Length (AA) Confidence
N-terminal 1 49 49 0,9772
Central domain 50 430 382 0,9899
C-terminal 431 503 72 0,9357
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Leuconostoc phage CHB [NCBI] · taxon 1897737
No lineage information
Host No host information

Coding sequence (CDS)

No CDS data available.

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

A0A219VHP1
ESMFold structure
Source ESMFold
pLDDT 78.7
Oligomeric state monomer
Download structure

Experimental validation

Literature-linked

A publication is attached to this entry, with nothing stating that an experiment backs the annotation. Treat as a lead, not as validation.

Tier Source Assay Claim Reference
Literature-linked PubMed
28651078
 literature_xref — PMID 28651078

Rows marked “Validated by sequence identity” come from a different entry carrying the same sequence — the experiment was not performed on this protein.

Literature

Title Authors Date PMID Source
— — 28651078 PubMed