Protein

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UniProt accession
A0A219VHP1 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
TF
Evidence Phold
Probability 1,00
Protein sequence
MVYDKHEWQDGELITSGKLNHMELGIQLADKQVSVKDYGAVGDGVADDTKSFINAFSENKGTKVIIPTGTYLITKQVSIFGDVEFQNAKVISTNNSQDYMFNVDGLDEINIIGFKYNNDNGRGAIKISNTKTVRLTSFDISGYSAETDYHKTDSALMLDNNTTIYLDDIKVHDHGFQYGAELEHLNRCISIQGDKTKTVIARGLQFSKANQGLVLSTPNGNVIVSDSSIDNTTDNSMYLLACLTFMATNVRFDDYYDESVIMGSGDYSFTNCWFSNVPNKVFGINNDTVGLSIIGCNIIQSDKHSGQIVSFRDVNYTLNTFIFESNRIVTAPDSTNNDLFYLGQINLFSIKNNTIKTFSISNGRNMFAFRNSDSNAPYTGVIKDNYVMPITKDVVIGTYYFARLYKEVGKVEISDNYISNGRMPMDNASVIYNGQKVFTSLGYVIDRTTRQSLYATTIPIKGRFNIGDVVYNTDPSNGVFAWVRVTTGLNNVSGVDWKTVSVN
Physico‐chemical
properties
protein length:503 AA
molecular weight: 55960,94330 Da
isoelectric point:5,17334
aromaticity:0,10934
hydropathy:-0,25308

Domains

Domains [InterPro]
IPR012334
24–458
IPR012334
IPR011050
28–290
IPR011050
IPR024535
33–233
IPR024535
A0A219VHP1
1 503
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Leuconostoc phage CHB
[NCBI] 		1897737 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
3df05e510eabacaf238f21195220be108e7965acaaae903735936cd2ce0f42e0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7870
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Leuconostoc mesenteroides and Leuconostoc pseudomesenteroides bacteriophages: Genomics and cross-species host ranges. Pujato SA, Guglielmotti DM, Martínez-García M, Quiberoni A, Mojica FJM 2017-09-18 28651078 PubMed
Leuconostoc mesenteroides and Leuconostoc pseudomesenteroides bacteriophages: Genomics and cross-species host ranges Silvina A. Pujato, Daniela M. Guglielmotti, Manuel Martínez-García, Andrea Quiberoni, Francisco J.M. Mojica 2017-09 10.1016/j.ijfoodmicro.2017.06.009 DOI