Protein

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Genbank accession
AGB06989.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,91
Protein sequence
MSKGTQIFNHVIDDAGTVTVEVEGTSFDGLTGGNNDLQTCLELVQAHALQPLPDYPIASTSVAGITLLSDNAAVADELNNTSAVTPSALNYWMENHATATELQYGFVKLITNSTIDNIDPTAAVEEAQKHAFTLKTLNYALNTRFYATESSPGAVRLATYAQATTTGTLSNSVAMTPQRVKEMLDVWANTTASDATETTKGLIRLANATEVNSTSASENNLAISPYRFNERTATTTRKAGFYLPNSTVANARTSNDHAVTVGTLDLFTATSSRVGVAKLANNLTTNDATQALSAAMGYKLNNEKIGVSGGTVTGTLKIDDVQSVSGTQLMTNGLIESSAMLNMYPVGAIYMSLESTSPATLFGGTWSRIAEGRVLVSEGTHGGRTFNVRQTGGEYEVILTEETMPTHKHAGWGDRWTYGGNGLGFGVAYEYGRSNPGSGRTDNDNYLYYSSPEGGGQPHNNVQPYYTVYMWERTA
Physico‐chemical
properties
protein length:475 AA
molecular weight: 50763,46730 Da
isoelectric point:4,98793
aromaticity:0,08000
hydropathy:-0,30379

Domains

Domains [InterPro]
IPR054500
281–303
IPR054500 SSF88874
IPR053827
343–474
IPR053827
AGB06989.1
1 475
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VH7D
[NCBI] 		1262539 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio harveyi
[NCBI] 		669 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGB06989.1 [NCBI]
Genbank nucleotide accession
KC131129 [NCBI]
CDS location
range 145139 -> 146566
strand +
CDS
ATGAGCAAAGGAACTCAAATTTTCAATCACGTGATTGACGATGCGGGTACGGTTACAGTTGAAGTCGAAGGTACTTCCTTTGATGGTCTTACTGGGGGTAATAACGATCTCCAAACGTGTCTTGAGCTTGTACAAGCTCATGCACTTCAACCATTACCCGATTACCCTATAGCATCAACATCTGTCGCGGGTATTACATTGTTAAGTGATAATGCAGCAGTCGCAGATGAGCTTAATAACACAAGCGCGGTGACACCATCTGCATTAAATTATTGGATGGAAAATCACGCGACTGCAACAGAACTTCAATACGGTTTTGTGAAGCTGATTACAAACAGCACGATTGATAACATTGACCCGACAGCCGCAGTAGAAGAAGCACAGAAACATGCATTCACGCTTAAAACATTGAACTACGCGTTGAATACTCGTTTCTATGCAACTGAATCTTCGCCGGGTGCTGTACGGCTAGCGACATATGCACAAGCAACGACAACAGGCACATTGTCTAATAGTGTGGCTATGACCCCACAGCGAGTTAAGGAAATGCTTGACGTGTGGGCGAATACTACCGCATCAGATGCTACAGAAACGACGAAAGGGTTGATTCGATTAGCAAATGCAACTGAAGTAAACAGCACATCAGCATCAGAAAACAATCTAGCAATTTCACCGTATCGATTCAATGAACGCACAGCGACAACTACGAGAAAGGCAGGTTTCTATCTACCGAACTCAACAGTTGCAAATGCGCGTACATCTAATGACCATGCAGTCACAGTCGGTACATTAGATTTATTCACTGCGACTAGCTCACGTGTTGGTGTTGCGAAACTTGCAAACAATCTAACAACAAACGACGCGACTCAAGCACTAAGTGCTGCAATGGGTTATAAGTTGAATAATGAAAAGATTGGGGTTTCAGGCGGGACAGTAACTGGTACATTGAAAATTGACGATGTTCAATCTGTAAGTGGTACTCAGTTAATGACGAATGGTCTGATTGAATCATCAGCCATGTTGAATATGTACCCTGTTGGTGCTATTTACATGTCACTTGAATCTACATCACCAGCTACGCTATTCGGCGGGACATGGTCTAGAATTGCAGAAGGTCGTGTGCTTGTATCTGAAGGTACACATGGTGGTAGAACATTCAACGTAAGACAAACAGGTGGTGAATACGAAGTTATCTTAACTGAAGAAACAATGCCAACTCACAAACACGCGGGTTGGGGTGATCGTTGGACTTACGGTGGCAACGGACTAGGGTTTGGAGTTGCATACGAATATGGTAGAAGCAACCCAGGTTCAGGTCGCACTGATAATGACAACTACTTGTATTACTCATCACCAGAAGGTGGTGGTCAACCACATAATAACGTACAGCCGTACTATACTGTTTACATGTGGGAAAGAACTGCATAA

Tertiary structure

PDB ID
42f3575cc63a421b361a25fbef80d562426d7862ec30a9288ef91b029b20bb40
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7370
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comeplete Genome Sequence Of a Novel Gaint Bacteriophage VH7D that Infects Vibrio harveyi Luo,Z. and Yu,Y. 2015-12 — GenBank