Protein

View in Explore
Genbank accession
YP_010076054.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,56
TSP
Evidence RBPdetect2
Probability 0,64
Seq2Symm
C1 confidence 0,945
C1 0,945
C3 0,004
C2 0,002
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MAVVGVPGWIGSSAANETGQRWMSQAAGQLRLGVPCLMSQFAGRSREIIHTLGADHNFNGQWFRDRCFEAGSAPIVFNITGDLVSYSKDVPLFFMYGDTPNEYVQLNIHGVTMYGRGGNGGSNSPGSAGGHCIQNDIGGRLRINNGGAIAGGGGGGGGGYYSPFSQMRLTFGGGGGRPFGAPGGSIDMQSGATGGTISAPGSGSVNGIYNGGNGGEVGSAGGRCNIRGQGSEYDGGAAGYAVIGSAPTWQNVGAIYGPRV
Physico‐chemical
properties
protein length:260 AA
molecular weight: 26198,62640 Da
isoelectric point:7,69989
aromaticity:0,09231
hydropathy:-0,20462

Domains

View on InterPro
Domain architecture
YP_010076054.1
1 260 aa
ATT 1–42 · RBD 47–260
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_010076054.1
1 260 aa
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,9295
Central domain 17 218 203 0,9139
C-terminal 219 260 41 0,6010
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Shigella phage CM8 [NCBI] · taxon 2591056
Uroviricota Caudoviricetes Pantevenvirales Tevenvirinae Tequatrovirus
Host No host information

Coding sequence (CDS)

Genbank protein accession
YP_010076054.1 [NCBI]
Genbank nucleotide accession
NC_054939.1 [NCBI]
CDS location
range 156946 -> 157728
strand +
CDS
ATGGCAGTAGTTGGTGTTCCTGGTTGGATTGGAAGTTCAGCCGCAAATGAAACAGGACAGCGCTGGATGAGTCAAGCGGCTGGTCAATTAAGATTGGGTGTTCCTTGCTTGATGAGTCAATTTGCAGGTCGCTCACGAGAAATTATTCACACGCTTGGAGCAGACCATAACTTCAATGGTCAATGGTTCCGAGATAGATGTTTTGAGGCAGGTAGTGCACCTATAGTGTTTAATATTACAGGTGATTTAGTATCATATTCTAAAGATGTTCCTTTATTCTTCATGTACGGAGATACACCAAATGAATATGTTCAGTTAAATATACATGGCGTAACGATGTATGGTCGTGGAGGTAATGGTGGTAGCAATAGTCCTGGCTCAGCTGGGGGTCATTGTATTCAAAACGATATTGGTGGGAGACTAAGAATTAATAATGGCGGAGCTATTGCAGGCGGCGGCGGTGGCGGCGGCGGCGGATATTATTCTCCTTTTTCACAAATGAGATTGACCTTTGGCGGCGGTGGCGGTCGTCCTTTTGGTGCGCCAGGCGGATCTATTGATATGCAATCAGGCGCGACTGGTGGTACTATTTCTGCACCTGGCTCAGGATCCGTGAATGGTATCTATAATGGCGGAAACGGTGGTGAAGTAGGTTCCGCGGGAGGTAGATGCAATATTCGCGGTCAAGGATCTGAATATGATGGCGGTGCTGCTGGTTATGCTGTCATAGGGTCCGCTCCAACATGGCAAAATGTTGGAGCAATATATGGTCCAAGAGTATAA

Genome Context

Tertiary structure

YP_010076054.1
ESMFold structure
Source ESMFold
pLDDT 87.0
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
A quest of great importance - developing a broad spectrum Shigella ssp. and Escherichia coli phage collection Kaczorowska,J., Casey,E., Neve,H., Noben,J.-P., Lugli,G.A., Ventura,M., van Sinderen,D. and Mahony,J. 2019-09-26 31561510 GenBank