Protein

View in Explore
Genbank accession
YP_010076054.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,56
TSP
Evidence RBPdetect2
Probability 0,64
Protein sequence
MAVVGVPGWIGSSAANETGQRWMSQAAGQLRLGVPCLMSQFAGRSREIIHTLGADHNFNGQWFRDRCFEAGSAPIVFNITGDLVSYSKDVPLFFMYGDTPNEYVQLNIHGVTMYGRGGNGGSNSPGSAGGHCIQNDIGGRLRINNGGAIAGGGGGGGGGYYSPFSQMRLTFGGGGGRPFGAPGGSIDMQSGATGGTISAPGSGSVNGIYNGGNGGEVGSAGGRCNIRGQGSEYDGGAAGYAVIGSAPTWQNVGAIYGPRV
Physico‐chemical
properties
protein length:260 AA
molecular weight: 26198,62640 Da
isoelectric point:7,69989
aromaticity:0,09231
hydropathy:-0,20462

Domains

View on InterPro
Domain architecture
YP_010076054.1
1 260 aa
ATT 1–42 · RBD 47–260
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_010076054.1
1 260 aa
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,9295
Central domain 17 218 203 0,9139
C-terminal 219 260 41 0,6010
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Shigella phage CM8 [NCBI] · taxon 2591056
Uroviricota Caudoviricetes Pantevenvirales Tevenvirinae Tequatrovirus
Host No host information

Coding sequence (CDS)

Genbank protein accession
YP_010076054.1 [NCBI]
Genbank nucleotide accession
NC_054939.1 [NCBI]
CDS location
range 156946 -> 157728
strand +
CDS
ATGGCAGTAGTTGGTGTTCCTGGTTGGATTGGAAGTTCAGCCGCAAATGAAACAGGACAGCGCTGGATGAGTCAAGCGGCTGGTCAATTAAGATTGGGTGTTCCTTGCTTGATGAGTCAATTTGCAGGTCGCTCACGAGAAATTATTCACACGCTTGGAGCAGACCATAACTTCAATGGTCAATGGTTCCGAGATAGATGTTTTGAGGCAGGTAGTGCACCTATAGTGTTTAATATTACAGGTGATTTAGTATCATATTCTAAAGATGTTCCTTTATTCTTCATGTACGGAGATACACCAAATGAATATGTTCAGTTAAATATACATGGCGTAACGATGTATGGTCGTGGAGGTAATGGTGGTAGCAATAGTCCTGGCTCAGCTGGGGGTCATTGTATTCAAAACGATATTGGTGGGAGACTAAGAATTAATAATGGCGGAGCTATTGCAGGCGGCGGCGGTGGCGGCGGCGGCGGATATTATTCTCCTTTTTCACAAATGAGATTGACCTTTGGCGGCGGTGGCGGTCGTCCTTTTGGTGCGCCAGGCGGATCTATTGATATGCAATCAGGCGCGACTGGTGGTACTATTTCTGCACCTGGCTCAGGATCCGTGAATGGTATCTATAATGGCGGAAACGGTGGTGAAGTAGGTTCCGCGGGAGGTAGATGCAATATTCGCGGTCAAGGATCTGAATATGATGGCGGTGCTGCTGGTTATGCTGTCATAGGGTCCGCTCCAACATGGCAAAATGTTGGAGCAATATATGGTCCAAGAGTATAA

Genome Context

Tertiary structure

YP_010076054.1
ESMFold structure
Source ESMFold
pLDDT 87.0
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
A quest of great importance - developing a broad spectrum Shigella ssp. and Escherichia coli phage collection Kaczorowska,J., Casey,E., Neve,H., Noben,J.-P., Lugli,G.A., Ventura,M., van Sinderen,D. and Mahony,J. 2019-09-26 — GenBank