Phage RBP Database

Genbank accession

YP_008239741.1 [GenBank]

Protein name

tail protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,90

Protein sequence

MALVIHYTRNEDGTFDVKRYRDNPINFAVGHIPDGVPFRVFIDEIGEDNDVTEDFEALKEDATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASLNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMTTYKVFNAAGKIVEYGYYDAGRGHLDIHPEDITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITIESNEIDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPDDTFSLVSAWTNTDVDLSGGGYQVVSVSEGTVTFIVPGGLVGRWQEISPGSFFRGDGEASLQPNNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLAFVTAEIQYQLLDENSAPYGPIYTAQGTVTGRTPDYNGVTIYADLPVASRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTARNMDKLLAVQKEIEDYFGDKQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRKGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDSQVFDSLKFSYIDPKTNVKETITIPETGGLKTETYDSKGIRNYKQAFWAASRRHQKNILKKISVSFTATEEGIFALPNRAVSVVKGSRMATYDGYVTAVNGLTVELSQPVKFTSGDDHSLILKLRDGGVQSVNVVPGAHDRQVIMTSVPQEAIYAGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSNGFDNGFN

Physico‐chemical properties

protein length:	852 AA
molecular weight:	93792,72960 Da
isoelectric point:	5,14969
aromaticity:	0,09859
hydropathy:	-0,36009

Domain architecture

YP_008239741.1

1 852 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

NF040662
Unmapped

NF040662

YP_008239741.1

1852 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0118
STR

DC_0118 DC_0808

YP_008239741.1

1852 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
NF040662	Unmapped	-	352	832	NCBIfam	host specificity factor TipJ family phage tail protein	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_008239741.1

1 852 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	231	231	0,9736
Central domain	232	430	200	0,5982
C-terminal	431	852	421	0,1637

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage Jersey [NCBI] · taxon 1340534

Uroviricota Caudoviricetes Sarkviridae Jerseyvirus Jerseyvirus jersey

Host

Salmonella [NCBI] · taxon 590

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Host

Salmonella enteritidis [NCBI] · taxon 149539

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_008239741.1 [NCBI]

Genbank nucleotide accession

NC_021777 [NCBI]

CDS location

range 21537 -> 24095
strand +

CDS

TTGGCGCTAGTAATCCACTACACACGAAATGAAGACGGCACGTTCGATGTCAAGCGCTATCGCGATAACCCGATTAACTTCGCCGTCGGCCACATCCCGGATGGGGTTCCGTTTCGCGTTTTCATTGATGAAATCGGAGAAGATAACGATGTAACAGAAGACTTCGAAGCGCTAAAAGAAGACGCGACTTTTCATATTGTTGAATCCGCTGGTGGTGGCGCTATTAAAGGGGTCATGAAGATTTTTAGCGTTATTCTTAAACCGTTAGCGAAGCTCTTGTCGCCGTCCGTGAAAGGTGCGTCCTTGAACCTTGCGAACTCACAGGCGGATTCCCCAAACAACAGTCTCACTGACCGTAACAACAAGGCACGCCCGTATGAGCGCAGCTACGATATCTGCGGGACGGTGCAAACCATCCCCAATAACCTTATGACTACTTATAAAGTGTTTAACGCTGCCGGTAAAATTGTAGAGTATGGCTACTACGACGCGGGTCGGGGGCACCTCGATATCCACCCTGAGGATATAACTGATGGCGATACGCGCGTTTCTGACATCACCGGCACGTCAGTCGCCGTGTACGCGCCGTATACGTCGCCTAATAATACATCCACACCGCAGGTCATGGTCGGCGACCCGATAGAACAAGGGCTGTACATCACCATAGAATCTAACGAAATAGACGGAGTGGTTCTTAAAGCGCCTAACGGCCTGGGCATTTCTTTCTCTTACATGTCCGGATACCCGTCCTTATCCGGTAACATCGGCACCATATACGACCCAACAGGTGGCTCGGATTTTTCGGGAGTACTGGTGCCTGATGACACGTTTTCACTGGTGTCCGCGTGGACAAATACAGACGTTGACCTGTCTGGCGGCGGGTATCAGGTAGTAAGCGTGTCCGAAGGGACTGTTACCTTTATTGTACCCGGTGGCCTCGTCGGCAGGTGGCAAGAAATAAGTCCCGGTTCGTTTTTCCGGGGTGATGGCGAGGCCTCGCTGCAACCAAACAACACGTATGAGAAAACCTTAACCGATTGGGTTTCAATAAACCGCACCGAGGTTGAGCGCATCGTGGCCAATATCGCCGCTGCGAACGGCATGTATAAAGACAACGGCAAATCGAAAACACTGGCGTTTGTCACCGCTGAGATACAGTACCAGTTACTTGATGAAAACAGCGCCCCTTATGGGCCTATATATACCGCGCAAGGAACTGTGACTGGGCGCACCCCGGACTACAACGGAGTCACTATCTATGCCGACCTGCCGGTTGCATCCCGTGTAAGAGTTAGGGCTCGCAGGGTTACAGACCTCGACTTCAATTTTGAAGGGTCTGTAGTCGATGAAATAACGTATGTGAACCTGTACGGGCAGACAAGAGACAACACCCCACACTACGGCAACCGAACAACCGTACACTCGATGCGCAAGCAGACACCGCGTGCTGCTGAGGTTAAGCAACCACAGTTGCGTATGATCGCCACCGAAATGGTGTATAAATACCTTGGTAATGGTGTTTTCGAAGACACGATGACCCCTAATACCCAGGCCGTGCAGTCTCTTATCCGCCTGGCACGTGACCCTGATGTTGGAGGGTTAAACTTAACGGCGCGGAATATGGACAAGTTACTTGCCGTTCAGAAAGAGATTGAAGATTATTTCGGCGACAAGCAAGCGGGGGAATTTTGCTACACGTTTGATGACTATAAAACCACTATGCAGGACATAGTTAGTACTATAGCAGACGCTATATTCTGCACCCCATATCGGAAAGGGGCGGATATCCTTCTTGATTTTGAACGCCCTCGCATGGGTCCTGAGATGGTGTTCACCCACCGGAGCAAGGCCGGTACTTCTGAAAAGTGGACCAGAACATTTAACGATTCTCAAGTTTTTGACAGCCTTAAATTCTCGTACATAGACCCTAAAACAAACGTTAAAGAAACCATAACCATACCCGAAACCGGGGGCCTTAAAACGGAGACTTACGACTCAAAAGGAATCCGCAACTATAAGCAGGCTTTCTGGGCAGCGAGCCGCCGCCACCAGAAGAACATTTTAAAGAAAATTTCGGTGTCGTTTACCGCCACTGAAGAGGGTATCTTTGCTTTACCAAATCGTGCCGTTAGTGTGGTTAAGGGCTCCAGGATGGCTACCTACGACGGCTACGTAACCGCGGTAAACGGGCTCACCGTAGAACTGTCACAACCGGTTAAGTTCACCTCGGGAGATGACCATTCTTTGATTCTCAAGTTACGTGACGGCGGAGTGCAAAGTGTTAATGTAGTCCCTGGGGCGCACGACCGGCAGGTAATTATGACGTCGGTACCGCAAGAAGCCATTTACGCAGGTAATAGTGCTTTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACAGTAGACCCAGGGGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTGCCGCCTTTCGGTCGTGCGTTCTCCAACGGATTCGATAACGGTTTTAACTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)