Phage RBP Database

Genbank accession

GENB_f884aedacdee [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence DepoScope

Probability 0,80

Seq2Symm

C1 confidence 0,999

C1	0,999
C2	0,005
C3	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MKKFSMRVMLVISVLFIAFGSANVSTAQERDTANKLPEEELGSLDTSNIIAEEVAQEKPAEVEQLEEIPTTDELMQNPDVQEQSVADSDDPDLTAVSSGAYWTIYYNSANDEYSLRMFGNVPRSKPSAWNSYLKSIKHIEIEEATLTGNFELYFRDTGFPALESVRIEQCNLSGVTSFDSAFYSSKTLKEVIIRDNDYPTAPSLLTTEGMFKNCSNLTELDLSGLDTSAVTTMRDMFYSCSALEELDVSHFDTSSVTNMRCMFQRSELLELDVSNFDTSSVTNMYSMFADCELLEKLDVSHFDTSSVTDMRAMFNNCQSLEKLDVSNFDTSSVTNMNSMFSNCPNLGKLEVSNFDTSSVTDMRLMFQNCASLEALDVSNFDTSSVTNMSSMFLTCTSLEELDLSNFDTSSVNDMRLMFQNCTALKSLYLDNFTHAASSADMFTGTTSLSYLFVSHNVSNFNGLENTNWYDEKNWVQFETLSQLQTYHRKQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQSKISGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWIENYTVIIPASISLNETSELKVEGINRGDKNLSVGLNRTATSISESNKLTLANTADTTVQCLAPLSWDGSETNPENAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNVVFSIKYE

Physico‐chemical properties

protein length:	689 AA
molecular weight:	76869,51350 Da
isoelectric point:	4,27807
aromaticity:	0,09724
hydropathy:	-0,30174

Domain architecture

GENB_f884aedacdee

1 689 aa

STR 115–465 · RBD 502–585 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

SSF52058
STR

SSF52058 IPR042229

GENB_f884aedacdee

1689 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_2029
ATT

DC_2029 DC_1444

GENB_f884aedacdee

1689 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
SSF52058	STR	SSF52058	115	465	Merged direct domain	SSF52058	Central	Low	Positional only	12 proteins / 12 hits
IPR042229	RBD	IPR042229	502	585	Merged direct domain	Listeria-Bacteroides repeat domain superfamily	C-terminal	Low	Positional only	14 proteins / 14 hits

Proteins with similar domain architecture

Phage

Listeria phage LM 4-14-1 [NCBI] · taxon 3113836

Viruses

Host No host information

Genbank protein accession

OR848117.1_CDS_[complement(13037..15106)] [NCBI]

Genbank nucleotide accession

OR848117.1 [NCBI]

CDS location

range 13037 -> 15106
strand -

CDS

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)