Protein

View in Explore
Genbank accession
QPB12521.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,69
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MGKGGGKQHTPYEAPNDLTSRQKLSIIDLVSEGPIEGPVGDLQGVFLNDTPVIDQSGNSNVNGMTAQWVSGTLEQPPLEGFASSSSETPVGVEVKKSTPVTRTITSRNIDRLRLTFGTQALVEVKDNGDRVGTSVELQIQVQRNGAWVTEKNVTIRGKRSNSPYLMAVVIDKLPPPPFGVRIVRITEDSTSDKLQNNTMWSSYTEITDIIQTYPGSAVAGLTFESEQFGNQFPRRNYLVKGRIIQVPDNYDPETRTYSGIWSGVFKPAYTNNPAWVLRDLLTHPIYGMGKRLNIAMIDKFALYVIAQHNDQLVPDGFGGKEPRATCNAYITDLRKAHDVISDLCSMMRLMPVWNGQQMTFVQDRPSDTVWPYTNANVINGRFNYSFSPLKARHNIIEVRFIDPSNGWKTSIELVSDDALVAKFGPNVLRVDAFGCTSRGQAHRYGLWILATERLESQTVDFSVGAEGLRHLPGDIIEIMDNDWVSEQVGGRLLAIDATQKIFTLDREVTPPKSGTAMISVINGAGKPERVKITSFLSDNQIKVEQMPKGVRAKGIWAIAQPNLARRLFRAMTVSDNGDGTYAITAVQHVPEKEAIVDQGAKFEPLPDTPLGGYLPPVENLSVEVSPDNESWQVEAHWTTSASVRGVDFLLKLTQADRIVGTAKTSDNFYRLGGLPQGNYVLSVVPQNKEGQKGEQSSVSFDINPPPPPSYIDVEPGFFSLGVIPHVGGQNALRLQYEFWFSEKQIQNINDVEYLAEYLGSGTMWVIQGRKLKAGQTYYVYVRTVNPVGKSQFVEASGKPEDRADEILEVIGDTFLSTEAGKQMQEQIDFSKEAIAELELDTIDVKQKVVSIDRDVEAVSEAVMMNTQFTTELHFSLKEEVADRKAEIFRIEQVQVTDREAAARWQEQITAKVDYNASEILNIKDAQSSYEKATAQQISQVKAELGETNKEVGDIKGRVTTVETATVDLKQAQAKFEQSTTAQFGEMRGYITNIETSLTNIEFAVSEAIMQTTAQVNETNSELLKTKAEVTRLATATATNEKATAQLVESVKAQHDQSEAEFIDVRKSIAEKDKAQSERTEQVRAELEKDINANKEGIDKNNNELSKVSAAVTNNTQSIATLEETTTQIKQTQQSQHEDTEAKIGKLSETTASNTEAITEVKEQSQSRFESNEATIANMQQTIANAESSLSEMGMQLTAEVGNQAIEQLRIKASITRLDTVTADKFQAFAQSFEKIETQFNDVNSSITTLKKTVSDNEKSQAETNQLIMSEIGDNKSAIELRGQTIFDHQGNGSAIYTIKTGINWNGQYYDAKFMMGATVQNGKVVTQIGFSADTFGIFNPSSGKLEPVFFVENGQVFINEAFINKATIEKIIVGTDMRSKNYVAGKTGTRIDMNNGAIEINGSDNNGSRMTLKNDQLAVFGGNKPKVIIGRLYGI
Physico‐chemical
properties
protein length:1435 AA
molecular weight: 158435,84120 Da
isoelectric point:5,08967
aromaticity:0,07178
hydropathy:-0,42557

Domains

Domains [InterPro]
IPR053171
Unmapped
1–1158
IPR053171 DC_1604
DC_0129
STR
3–971
DC_0129 Coil IPR015406
IPR055385
ATT
85–208
IPR055385 IPR032876 IPR055383 IPR057587 Coil
QPB12521.1
1 1435
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
RBD
STR 3-84 | ATT 85-208 | STR 209-333 | ATT 334-495 | STR 496-706 | ATT 707-810 | STR 811-971 | RBD 1194-1434 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPB12521.1
1 1435
Domain Start End Length (AA) Confidence
N-terminal 1 1399 1399 0,9628
Central domain 1400 1424 26 0,4917
C-terminal 1425 1435 10 0,8381
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-1399
Central
1400-1424
C-terminal
1425-1435

Taxonomy

  Name Taxonomy ID Lineage
Phage Providencia phage PSTCR8lys
[NCBI] 		2783551 No lineage information
Host Providencia stuartii
[NCBI] 		588 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPB12521.1 [NCBI]
Genbank nucleotide accession
MW057859.1 [NCBI]
CDS location
range 35793 -> 40100
strand +
CDS
ATGGGTAAGGGTGGCGGCAAACAGCATACTCCGTATGAAGCGCCAAACGATTTAACATCACGACAAAAGTTATCAATTATTGACCTTGTGAGTGAGGGGCCAATTGAAGGGCCGGTCGGTGATTTGCAGGGAGTATTCTTAAATGATACGCCTGTTATTGATCAGTCAGGAAACAGTAACGTTAATGGAATGACGGCTCAATGGGTTTCTGGAACACTGGAGCAACCACCGTTAGAGGGCTTTGCTTCTTCATCCAGTGAGACCCCCGTGGGGGTAGAGGTGAAAAAAAGCACCCCCGTTACTCGCACGATCACATCACGAAATATTGACCGGCTTCGTTTAACGTTTGGCACACAGGCACTTGTTGAAGTTAAAGATAACGGGGATCGTGTTGGCACTTCTGTTGAGTTACAAATTCAAGTGCAACGCAATGGCGCTTGGGTGACAGAAAAAAATGTCACTATCCGAGGAAAAAGAAGTAATTCACCTTATTTGATGGCGGTTGTTATTGATAAATTACCACCGCCGCCATTCGGTGTACGCATAGTCAGGATCACGGAAGACAGTACAAGCGATAAGTTACAAAACAACACCATGTGGTCAAGTTATACTGAGATCACCGATATCATTCAAACCTATCCCGGCTCTGCGGTTGCAGGGCTTACTTTTGAGAGTGAGCAATTCGGTAACCAATTCCCACGCCGCAACTATCTTGTTAAAGGGCGCATTATTCAAGTGCCTGATAATTACGATCCTGAAACGAGAACTTACTCCGGTATTTGGAGTGGCGTTTTTAAACCAGCATATACGAACAATCCGGCGTGGGTGCTACGAGATCTTTTAACCCACCCGATCTATGGAATGGGTAAGCGGCTTAATATTGCCATGATTGACAAGTTTGCTCTCTATGTCATTGCTCAACATAATGATCAGTTGGTGCCTGACGGCTTTGGCGGCAAAGAGCCTCGAGCGACCTGCAACGCTTACATTACCGATTTGCGAAAAGCTCATGACGTCATCAGTGATCTCTGTTCAATGATGCGCCTCATGCCTGTGTGGAACGGGCAGCAAATGACATTTGTTCAAGATCGTCCGAGCGACACAGTGTGGCCATACACAAATGCCAATGTCATCAATGGTCGATTTAACTACAGTTTTAGCCCATTAAAAGCACGTCATAATATTATCGAAGTGCGGTTTATTGACCCATCCAACGGATGGAAAACCAGTATTGAGCTGGTTTCTGATGATGCATTAGTTGCTAAATTTGGCCCTAATGTTTTAAGGGTGGATGCGTTTGGTTGTACCAGCCGAGGTCAAGCCCACCGGTATGGCTTATGGATCTTAGCCACGGAAAGATTGGAGTCTCAAACCGTTGATTTTAGTGTTGGCGCTGAAGGCCTACGGCACTTACCCGGTGATATTATTGAAATTATGGATAATGACTGGGTTTCTGAGCAAGTTGGTGGGCGTTTGCTTGCTATTGATGCTACTCAGAAAATATTCACATTAGACAGAGAAGTGACCCCACCAAAATCCGGTACCGCTATGATCTCGGTAATTAATGGCGCAGGAAAGCCGGAGCGCGTTAAAATTACAAGCTTCCTATCCGACAACCAGATAAAAGTTGAACAAATGCCAAAAGGGGTCAGAGCTAAAGGCATTTGGGCGATAGCGCAACCTAATTTAGCAAGACGGCTATTTAGGGCAATGACCGTTTCTGATAATGGGGATGGCACCTATGCGATTACAGCGGTGCAGCATGTTCCAGAGAAAGAAGCGATTGTTGATCAAGGGGCTAAATTCGAACCGCTGCCTGATACGCCTTTGGGTGGGTATTTACCCCCAGTTGAAAACCTTTCAGTTGAAGTTAGTCCAGATAATGAAAGCTGGCAAGTTGAGGCGCACTGGACGACATCAGCCTCTGTACGTGGTGTTGACTTTCTTCTTAAGCTGACCCAAGCCGATCGCATTGTTGGTACCGCGAAAACATCGGATAACTTTTATCGCCTAGGTGGCTTACCCCAAGGTAACTATGTTTTGTCAGTGGTACCACAAAACAAAGAAGGGCAAAAGGGGGAGCAATCATCAGTATCATTTGATATTAACCCACCGCCACCGCCGTCTTACATTGATGTTGAGCCGGGCTTTTTTAGCCTAGGGGTTATCCCTCACGTTGGCGGTCAAAATGCCCTGCGCTTGCAATATGAATTTTGGTTTTCTGAGAAGCAGATACAGAATATCAATGATGTTGAGTATCTAGCGGAATACCTCGGTAGCGGTACGATGTGGGTTATTCAAGGAAGAAAGCTTAAAGCTGGCCAGACATATTATGTTTATGTCAGAACTGTAAACCCAGTGGGCAAATCGCAGTTTGTTGAAGCTAGCGGCAAGCCAGAGGATCGCGCTGATGAAATACTGGAAGTTATTGGCGACACCTTCCTCTCCACCGAAGCAGGCAAGCAGATGCAGGAGCAGATTGACTTTAGCAAAGAAGCGATTGCAGAGCTTGAGTTGGACACGATTGATGTGAAGCAGAAAGTTGTCAGCATTGACAGAGATGTTGAAGCGGTCAGCGAAGCAGTAATGATGAACACTCAGTTCACTACAGAATTACATTTTAGTTTGAAAGAAGAAGTTGCTGATAGAAAAGCTGAGATATTCCGCATTGAGCAAGTGCAAGTCACTGACAGAGAAGCCGCTGCGCGCTGGCAAGAGCAAATCACCGCAAAAGTCGATTATAACGCATCTGAAATCCTGAATATTAAGGATGCTCAGTCGAGTTATGAGAAAGCAACAGCGCAGCAAATCAGTCAAGTTAAAGCGGAATTAGGAGAGACAAATAAAGAAGTTGGTGACATCAAAGGTCGTGTTACTACAGTCGAAACAGCGACAGTTGACTTGAAGCAAGCGCAAGCGAAGTTTGAACAATCAACAACGGCTCAGTTTGGTGAAATGCGCGGCTACATTACTAACATTGAAACGTCACTGACTAACATCGAGTTTGCAGTATCAGAAGCGATTATGCAGACAACTGCACAAGTTAATGAAACTAACTCAGAGTTACTGAAAACGAAAGCAGAAGTCACTCGACTTGCAACAGCGACGGCAACAAATGAAAAAGCTACTGCACAATTAGTTGAAAGTGTAAAAGCACAACATGATCAGTCAGAAGCTGAATTTATTGATGTGCGTAAATCAATCGCAGAGAAAGACAAAGCACAGTCAGAGCGCACAGAACAAGTGCGCGCAGAGCTTGAAAAAGATATCAACGCTAACAAAGAGGGTATTGATAAAAACAACAATGAGCTATCGAAAGTTAGTGCTGCTGTGACAAACAATACACAGTCAATCGCAACACTAGAAGAAACGACAACTCAGATTAAGCAAACTCAACAAAGTCAGCATGAAGATACAGAAGCTAAAATCGGCAAGCTATCTGAAACAACAGCAAGCAACACGGAAGCGATAACGGAAGTCAAAGAGCAGAGTCAGTCTCGCTTTGAAAGCAATGAAGCGACGATTGCAAACATGCAGCAAACAATTGCTAATGCTGAAAGCTCACTGTCTGAAATGGGTATGCAGTTGACTGCGGAGGTTGGAAATCAAGCAATTGAGCAACTGAGAATTAAAGCGTCAATTACTCGTTTAGATACAGTAACAGCTGACAAGTTTCAGGCATTCGCACAGTCATTCGAGAAAATTGAAACTCAATTCAATGATGTCAATTCAAGTATTACAACTCTCAAGAAAACTGTATCCGACAATGAGAAATCACAAGCTGAAACTAATCAGTTAATTATGTCTGAAATTGGAGATAACAAGTCAGCAATTGAACTTCGTGGTCAAACTATTTTCGATCACCAAGGGAATGGCTCTGCTATCTACACAATCAAGACCGGCATTAATTGGAATGGTCAATATTACGATGCTAAATTCATGATGGGGGCGACTGTTCAGAATGGAAAAGTAGTGACTCAGATCGGCTTTAGTGCTGATACGTTTGGTATTTTCAATCCATCTAGCGGTAAATTGGAACCCGTTTTTTTCGTTGAGAATGGACAGGTCTTTATCAATGAAGCGTTTATCAACAAAGCTACAATTGAAAAAATCATTGTGGGTACAGATATGCGCTCTAAAAATTATGTCGCAGGGAAAACAGGGACACGGATTGATATGAATAACGGGGCTATTGAAATAAATGGAAGCGACAATAATGGGTCACGCATGACGCTTAAAAACGACCAACTTGCAGTATTTGGAGGAAATAAACCTAAGGTAATTATTGGAAGGTTGTATGGAATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6a99d9432978460a1e6d166f8074cf3e29dbfe6d18744ab93c380c032ebf5ea9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7420
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel bacteriophages targeting Providencia spp. as potential agents for phage therapy Rakov,C., Alkalay-Oren,S., Coppenhagen-Glazer,S. and Hazan,R. 2021-04-02 — GenBank