Phage RBP Database

Genbank accession

YP_010082185.1 [GenBank]

Protein name

virion structural protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,83

Protein sequence

MIYILDRFARNVVAVLTNTSPKACPYWDDAHTEQLDTGYLSYSFRCPADHPTAEFLRAENHVLIRDLDGIYILFQIKTVEDAIDNGQHTKRVQAENAAVGDLYGTIIRPTVQNGITARQALTYALQASGWLPGQIDWQGIETFDWQDYPTALAAIQDIGRKFSGELRFRVEFANGAVGNRYVDLTKRGRVTGVRFDYGRNMRGIKRTEDSSDMVTALIGVGKADENGVRMTFTTQKWDETDEHPAKPIGQDFIADPDALQKWGRADGRHIIGVYEDNNADNPLVLMRNTWEELKKRNRPRLTYELDAVLLESLTGYEHTKVRLGDTIVVKDMSFVPYLAVEARVIELVRSYADPSQDKVTLGEFKPLDIQSNELIRRLSDIISRNSGKWEAIGDGEQIYKGPTPPANPAKDTIWLDTSVEPNVFRRYDGKAWVAASPTKPGDIGAETPQGAQDKANKVKDDVANGRISIPADSLKGIMDVARTKIRQGSNMYWDSGGLVMVNPNNANERVRLSSGGIGVSTNGGASYQTAMTGAGVVAERIVGNVISGVTLSGVNLTTSKDIRVGNRIYLGTAGGGEKSLVFNENRGVGIYGGGGQYGSDISLQGNGLNLRVDRVFFGRNAKTEYTQDRFTLRNNSQASAVLSSRQRLGPKSWTRVNFNEAYADNWNEFNRSANRFVVGMDGTYLVQLSLGFNLEDTHNGPHRVSMAVYKNGTQYSQVFYTTYANDVLIATGTCIIYGAKRGDYIEGHAYTTSLSAYISADSKISAMKIWRLG

Physico‐chemical properties

protein length:	773 AA
molecular weight:	85448,76100 Da
isoelectric point:	6,83144
aromaticity:	0,09056
hydropathy:	-0,42497

Domain architecture

YP_010082185.1

1 773 aa

ENZ 113–366 · RBD 637–769 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR007119
Unmapped

IPR007119 IPR008983

IPR010572
ENZ

IPR010572 IPR008983

YP_010082185.1

1773 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1956
STR

DC_1956 DC_1224

YP_010082185.1

1773 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR007119	Unmapped	-	29	362	InterPro	Phage tail spike protein, N-terminal domain	-	-	-	-
IPR010572	ENZ	DC_0675	113	366	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits
IPR008983	RBD	IPR008983	637	769	Merged direct domain	Tumour necrosis factor-like domain superfamily	C-terminal	Low	Positional only	19 proteins / 19 hits
IPR008983	RBD	IPR008983	647	745	Merged direct domain	Tumour necrosis factor-like domain superfamily	C-terminal	Low	Positional only	19 proteins / 19 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_010082185.1

1 773 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	558	558	0,9935
Central domain	559	757	200	0,2810
C-terminal	758	773	15	0,9966

Note: Constraints were applied during segmentation.
Fixed 13 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Paenibacillus phage C7Cdelta [NCBI] · taxon 2249773

Uroviricota Caudoviricetes Halcyonevirus

Host No host information

Genbank protein accession

YP_010082185.1 [NCBI]

Genbank nucleotide accession

NC_055028 [NCBI]

CDS location

range 14788 -> 17109
strand +

CDS

GTGATATACATTCTCGACAGATTTGCTCGAAATGTTGTGGCGGTCCTGACGAACACAAGCCCGAAGGCGTGCCCGTACTGGGACGACGCACACACCGAGCAACTCGATACCGGATACCTAAGCTATTCATTCCGATGTCCCGCCGATCATCCGACGGCGGAGTTTTTGCGTGCCGAAAACCACGTTTTGATCCGCGACCTTGACGGCATCTATATCCTGTTTCAGATCAAAACGGTAGAGGATGCGATAGACAACGGCCAGCATACGAAAAGAGTGCAGGCCGAAAACGCAGCAGTCGGCGATCTATACGGCACAATCATCCGCCCGACTGTACAAAACGGTATTACCGCCCGGCAGGCGCTGACATATGCGCTGCAAGCAAGTGGATGGCTACCGGGCCAAATCGACTGGCAAGGCATTGAAACGTTTGACTGGCAGGACTATCCTACGGCACTCGCAGCCATACAAGACATCGGCCGCAAGTTTTCGGGTGAGCTCCGGTTCCGCGTCGAATTTGCGAATGGTGCGGTTGGAAACCGTTACGTCGATCTGACCAAGCGCGGGCGAGTGACGGGCGTCCGTTTTGACTATGGCCGGAATATGCGGGGGATCAAGCGTACCGAAGATAGCTCCGATATGGTAACCGCACTGATTGGCGTGGGCAAGGCCGATGAAAACGGGGTTCGGATGACGTTTACCACGCAAAAGTGGGACGAAACCGACGAGCACCCGGCCAAGCCGATTGGGCAGGACTTTATCGCAGACCCAGACGCGTTGCAAAAGTGGGGGCGTGCGGACGGCCGACACATAATCGGTGTTTACGAGGATAACAACGCAGATAATCCACTTGTTCTTATGCGTAACACGTGGGAGGAGCTTAAGAAACGGAACAGGCCGCGCCTCACCTACGAACTCGACGCTGTCCTACTCGAATCCCTGACCGGGTATGAACATACAAAGGTAAGGCTCGGGGATACCATCGTCGTCAAGGACATGAGTTTTGTACCATATTTAGCCGTCGAAGCCCGCGTCATAGAGCTTGTGCGCAGTTATGCCGACCCGTCACAAGACAAGGTGACGCTGGGAGAGTTTAAGCCGCTCGACATCCAGAGTAATGAGTTAATACGGAGGCTTTCCGATATCATTTCGCGCAATTCCGGTAAGTGGGAAGCTATCGGCGACGGTGAGCAAATTTACAAAGGCCCGACACCTCCCGCCAACCCGGCGAAAGATACCATTTGGCTGGATACTTCGGTAGAGCCAAACGTATTCAGACGCTATGACGGTAAAGCTTGGGTTGCGGCCAGTCCGACCAAGCCGGGCGATATCGGAGCTGAAACGCCGCAAGGCGCTCAAGACAAAGCTAACAAAGTCAAGGACGACGTAGCTAACGGGAGGATTAGCATTCCTGCGGACTCCCTAAAAGGGATCATGGACGTTGCCCGAACGAAAATCCGGCAAGGCTCTAACATGTACTGGGATTCAGGCGGCCTCGTCATGGTCAATCCGAATAATGCTAACGAGCGTGTGCGGCTGTCATCCGGCGGCATCGGCGTAAGCACCAACGGCGGGGCATCGTACCAAACGGCCATGACCGGTGCCGGAGTCGTGGCTGAGCGGATTGTCGGAAATGTAATCTCGGGAGTCACGCTGTCTGGTGTTAACCTGACGACATCCAAGGACATTCGGGTCGGCAACAGGATTTACCTCGGTACTGCGGGAGGCGGCGAAAAGAGCCTAGTTTTCAACGAGAATCGAGGCGTTGGGATATACGGAGGCGGCGGACAGTATGGCTCGGATATATCCTTGCAGGGAAACGGCCTAAATCTCCGTGTAGATCGCGTGTTTTTTGGACGCAATGCAAAAACGGAGTATACGCAGGACCGGTTCACGCTCCGAAATAACTCGCAGGCATCTGCGGTTTTGAGCTCAAGGCAGCGACTCGGACCAAAGTCATGGACGAGGGTAAATTTCAACGAAGCGTATGCGGATAACTGGAACGAGTTTAACCGGTCCGCAAACCGGTTTGTCGTAGGTATGGACGGTACCTACCTTGTCCAACTGTCGCTTGGATTTAACCTTGAGGACACACATAACGGGCCGCATCGGGTATCCATGGCCGTATATAAAAATGGAACGCAATACTCTCAGGTATTTTACACCACCTACGCAAATGACGTTTTGATAGCTACGGGTACCTGTATTATATACGGAGCCAAGCGTGGTGATTACATTGAGGGACATGCGTATACCACTAGCCTGAGCGCGTATATCTCGGCAGATTCGAAAATATCTGCAATGAAAATATGGCGGTTGGGGTGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)