Phage RBP Database

UniProt accession

A0A513ZYK3 [UniProt]

Protein name

Tail fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 1,00

Seq2Symm

C3 confidence 0,968

C3	0,968
C1	0,185
I	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MADIQLKYLQDLEAAGGVAATDLMHVSQSGLDRSVTVSVLMRFMTDAFFPVGSVMLRSDAKNPNTMLPGTTWVRLAAGRNIRIAAENGSDVLNIGGADDVTLTGNNLPSHSHAFQNGATNQAGNHTHNVWTGNSGSHTHGAYTDAQGNHAHRAWTDAQGQHQHGVGIRNPSNYGGSGGYYGVRGIGLGSGAWAQGGGQTGSESLTSADGNHSHNVGMDAAGNHGHNITVNAVGDHAHAAAMDERGAHTHTVTGTIGSTGNNASFSVVNAYVNLAAWRRTQ

Physico‐chemical properties

protein length:	280 AA
molecular weight:	29020,20410 Da
isoelectric point:	6,41544
aromaticity:	0,05714
hydropathy:	-0,41250

Domain architecture

A0A513ZYK3

1 280 aa

ATT 44–152 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053827
ATT

IPR053827

A0A513ZYK3

1280 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0294
STR

DC_0294

DC_0348
RBD

DC_0348

A0A513ZYK3

1280 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053827	ATT	DC_0313	44	152	InterPro cluster	Baseplate structural protein Gp10, C-terminal domain	C-terminal	Medium	Text match	489 proteins / 489 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

A0A513ZYK3

1 280 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	46	46	0,9947
Central domain	47	245	200	0,0051
C-terminal	246	280	34	0,9978

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pantoea phage vB_PagM_PSKM [NCBI] · taxon 2588094

Uroviricota Caudoviricetes Dibbivirus Dibbivirus PSKM

Host

Pantoea agglomerans [NCBI] · taxon 549

Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea agglomerans

Genbank protein accession

QDH45785.1 [NCBI]

Genbank nucleotide accession

MK798144 [NCBI]

CDS location

range 22572 -> 23414
strand +

CDS

ATGGCTGATATTCAACTAAAGTACCTACAGGATCTTGAGGCCGCTGGCGGAGTTGCGGCTACGGACCTGATGCACGTAAGCCAATCAGGCTTAGACAGATCCGTTACCGTGTCAGTGCTGATGCGGTTTATGACTGATGCGTTTTTCCCGGTAGGCTCCGTCATGCTGAGATCTGACGCGAAGAACCCTAATACGATGCTACCCGGCACGACTTGGGTTAGGCTGGCGGCTGGTCGCAATATCAGGATCGCCGCTGAGAATGGCTCAGACGTTCTCAACATCGGCGGGGCTGATGATGTTACTTTGACCGGCAACAACCTTCCATCGCACAGCCACGCATTCCAAAACGGTGCGACAAACCAGGCCGGGAACCACACGCACAACGTTTGGACAGGTAACTCAGGGAGCCACACTCACGGCGCATACACTGATGCGCAGGGCAACCACGCGCACCGGGCATGGACTGATGCGCAAGGGCAGCACCAACACGGCGTTGGTATCCGTAACCCGTCGAACTACGGCGGATCAGGCGGTTACTATGGCGTGAGGGGTATTGGTCTCGGATCTGGTGCTTGGGCGCAGGGCGGGGGCCAGACAGGAAGCGAATCACTGACCAGCGCCGATGGAAACCACTCGCACAACGTCGGGATGGATGCGGCCGGTAACCACGGTCATAACATCACTGTGAACGCAGTTGGCGATCACGCTCACGCAGCGGCGATGGATGAGCGAGGCGCGCACACTCACACGGTTACAGGTACGATTGGCAGTACCGGTAATAATGCGTCGTTCTCAGTTGTTAACGCTTATGTTAATCTAGCGGCCTGGCGACGTACTCAATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)