Phage RBP Database

UniProt accession

A0A513ZYK3 [UniProt]

Protein name

Tail fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 1,00

Protein sequence

MADIQLKYLQDLEAAGGVAATDLMHVSQSGLDRSVTVSVLMRFMTDAFFPVGSVMLRSDAKNPNTMLPGTTWVRLAAGRNIRIAAENGSDVLNIGGADDVTLTGNNLPSHSHAFQNGATNQAGNHTHNVWTGNSGSHTHGAYTDAQGNHAHRAWTDAQGQHQHGVGIRNPSNYGGSGGYYGVRGIGLGSGAWAQGGGQTGSESLTSADGNHSHNVGMDAAGNHGHNITVNAVGDHAHAAAMDERGAHTHTVTGTIGSTGNNASFSVVNAYVNLAAWRRTQ

Physico‐chemical properties

protein length:	280 AA
molecular weight:	29020,20410 Da
isoelectric point:	6,41544
aromaticity:	0,05714
hydropathy:	-0,41250

Domain architecture

A0A513ZYK3

1 280 aa

ATT 44–152 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053827
ATT

IPR053827

A0A513ZYK3

1280 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0294
STR

DC_0294

DC_0348
RBD

DC_0348

A0A513ZYK3

1280 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053827	ATT	DC_0313	44	152	InterPro cluster	Baseplate structural protein Gp10, C-terminal domain	C-terminal	Medium	Text match	489 proteins / 489 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

A0A513ZYK3

1 280 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	46	46	0,9947
Central domain	47	245	200	0,0051
C-terminal	246	280	34	0,9978

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pantoea phage vB_PagM_PSKM [NCBI] · taxon 2588094

Uroviricota Caudoviricetes Dibbivirus

Host

Pantoea agglomerans [NCBI] · taxon 549

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

QDH45785.1 [NCBI]

Genbank nucleotide accession

MK798144 [NCBI]

CDS location

range 22572 -> 23414
strand +

CDS

ATGGCTGATATTCAACTAAAGTACCTACAGGATCTTGAGGCCGCTGGCGGAGTTGCGGCTACGGACCTGATGCACGTAAGCCAATCAGGCTTAGACAGATCCGTTACCGTGTCAGTGCTGATGCGGTTTATGACTGATGCGTTTTTCCCGGTAGGCTCCGTCATGCTGAGATCTGACGCGAAGAACCCTAATACGATGCTACCCGGCACGACTTGGGTTAGGCTGGCGGCTGGTCGCAATATCAGGATCGCCGCTGAGAATGGCTCAGACGTTCTCAACATCGGCGGGGCTGATGATGTTACTTTGACCGGCAACAACCTTCCATCGCACAGCCACGCATTCCAAAACGGTGCGACAAACCAGGCCGGGAACCACACGCACAACGTTTGGACAGGTAACTCAGGGAGCCACACTCACGGCGCATACACTGATGCGCAGGGCAACCACGCGCACCGGGCATGGACTGATGCGCAAGGGCAGCACCAACACGGCGTTGGTATCCGTAACCCGTCGAACTACGGCGGATCAGGCGGTTACTATGGCGTGAGGGGTATTGGTCTCGGATCTGGTGCTTGGGCGCAGGGCGGGGGCCAGACAGGAAGCGAATCACTGACCAGCGCCGATGGAAACCACTCGCACAACGTCGGGATGGATGCGGCCGGTAACCACGGTCATAACATCACTGTGAACGCAGTTGGCGATCACGCTCACGCAGCGGCGATGGATGAGCGAGGCGCGCACACTCACACGGTTACAGGTACGATTGGCAGTACCGGTAATAATGCGTCGTTCTCAGTTGTTAACGCTTATGTTAATCTAGCGGCCTGGCGACGTACTCAATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)