Protein

View in Explore
Genbank accession
YP_009984896.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MAAMTPQQSVRAVYKAEQEINSTENKNTSASTVKGDNGFCILASVYNSSSDQYIQNFKAITFDSVPEVGVTREADVTSFPVESGSDVSDHVQIKNNRFKLSGIITETPIRLMRDQLYSAGVNGARISQAIEYLDQIFESRQPIVLLTEHRTFENVILKGYSYDYKSEFAMQFDLEFEQIRLVSKATTNAIAVKTAPNKSTGGDVKGQVASNGPKSDITVRTAEATNTPTNNGG
Physico‐chemical
properties
protein length:233 AA
molecular weight: 25511,08370 Da
isoelectric point:5,32544
aromaticity:0,07725
hydropathy:-0,41717

Domains

View on InterPro
Domain architecture
YP_009984896.1
1 233 aa
ATT 62–188 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009984896.1
1 233 aa
Domain Start End Length (AA) Confidence
N-terminal 1 19 19 0,8684
Central domain 20 218 200 0,0416
C-terminal 219 233 14 0,9840
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Escherichia phage vB_EcoM-Ro121c4YLVW [NCBI] · taxon 2144176
Uroviricota Caudoviricetes Stephanstirmvirinae Phapecoctavirus Ro121c4YLVW
Host No host information

Coding sequence (CDS)

Genbank protein accession
YP_009984896.1 [NCBI]
Genbank nucleotide accession
NC_052654.1 [NCBI]
CDS location
range 49246 -> 49947
strand -
CDS
ATGGCAGCAATGACTCCACAACAGTCGGTGAGAGCCGTCTATAAGGCAGAACAGGAAATCAACTCTACCGAGAATAAAAATACCTCGGCATCTACTGTAAAGGGTGATAATGGTTTCTGCATTTTAGCAAGTGTTTATAATAGTTCAAGTGATCAATACATTCAAAACTTTAAAGCAATTACTTTCGATTCGGTCCCTGAAGTAGGTGTAACTCGTGAGGCAGATGTTACAAGTTTTCCAGTAGAATCAGGATCGGATGTAAGTGACCACGTTCAAATAAAAAACAACAGATTTAAACTTTCAGGTATAATTACCGAAACACCAATTCGGCTTATGCGAGATCAATTATACAGTGCAGGTGTAAATGGGGCAAGGATTTCTCAAGCAATAGAATATCTAGATCAAATATTTGAGTCAAGACAACCAATAGTTCTTTTGACAGAACACAGGACTTTTGAAAATGTTATTCTGAAAGGCTACTCTTATGATTATAAATCTGAATTTGCTATGCAATTTGATTTAGAGTTCGAACAAATTCGTCTAGTCTCTAAGGCCACTACTAATGCTATTGCTGTAAAAACAGCACCAAATAAGTCAACTGGTGGTGATGTGAAAGGTCAAGTCGCTTCTAATGGTCCTAAGTCAGATATTACAGTAAGAACTGCTGAAGCTACTAATACCCCAACAAACAACGGAGGTTAA

Genome Context

Tertiary structure

YP_009984896.1
ESMFold structure
Source ESMFold
pLDDT 71.2
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Isolation of Bacteriophages against O121, O145 and O157 Shiga Toxin-Producing Escherichia coli (STEC) from Non-Fecal Composts and the Potential Use for Improvement of Produce Safety Liao,Y.-T., Quintela,I.A., Bridges,D.F., Liu,F., Sun,X. and Wu,V.C. 2019-04-02 — GenBank