Phage RBP Database

Genbank accession

AIX31039.1 [GenBank]

Protein name

tail collar domain protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,99

Protein sequence

MSQINFPNIPSDGDEFLAPNGTTYQYDSDTGQWKILLGPGADGPKGPIGPEGATGSTGPDGPTGATGTDATRITGEIIAFGGTTVPSGWLECNGQAAPSALAAVLGISNVPDLRGEFIRGFDNGRGVDSGRAILTAQGDEFESHTHIQNSHNHTQNPHTHQANYTPLTYVAGQPQANGLVTAVTALTNISTNTATNIANTATNQSTGGTETRPRNISLMYIIKT

Physico‐chemical properties

protein length:	224 AA
molecular weight:	23189,04000 Da
isoelectric point:	4,90415
aromaticity:	0,05804
hydropathy:	-0,42991

Domain architecture

AIX31039.1

1 224 aa

ATT 74–119 · STR 120–223 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

SSF88874
STR

SSF88874

IPR037053
ATT

IPR037053

IPR011083
ATT

IPR011083

SSF88874
STR

SSF88874

AIX31039.1

1224 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
SSF88874	STR	SSF88874	71	223	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	74	119	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	75	118	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
SSF88874	STR	SSF88874	75	223	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AIX31039.1

1 224 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	213	213	0,4534
Central domain	214	213	1	0,0035
C-terminal	214	224	10	0,9831

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Synechococcus phage ACG-2014f [NCBI] · taxon 1493511

Uroviricota Caudoviricetes Pantevenvirales Atlauavirus Atlauavirus tusconc8

Host

Synechococcus sp. WH 7803 [NCBI] · taxon 32051

Bacteria Cyanobacteria Oscillatoriophycideae Chroococcales Synechococcus

Genbank protein accession

AIX31039.1 [NCBI]

Genbank nucleotide accession

KJ019098 [NCBI]

CDS location

range 212035 -> 212709
strand +

CDS

ATGTCTCAAATCAATTTCCCAAATATCCCATCAGATGGTGATGAGTTTTTGGCACCCAATGGTACAACTTACCAATATGATTCCGACACAGGTCAGTGGAAGATTCTATTAGGTCCTGGTGCCGATGGTCCCAAGGGTCCTATAGGTCCTGAAGGTGCTACTGGATCCACAGGTCCCGATGGTCCTACTGGTGCTACTGGAACGGATGCTACAAGAATAACTGGTGAGATTATTGCATTTGGTGGAACTACTGTTCCATCTGGTTGGCTTGAATGTAATGGTCAAGCTGCTCCTAGTGCTCTTGCTGCTGTATTAGGTATATCTAATGTACCAGACTTACGTGGTGAGTTTATAAGAGGATTTGATAACGGTAGAGGTGTTGATAGTGGCCGTGCCATTCTCACCGCTCAGGGTGATGAATTTGAGAGTCACACACACATTCAAAATTCCCATAACCATACACAAAATCCACACACTCACCAAGCAAATTACACACCCTTAACCTATGTGGCGGGGCAACCACAAGCAAATGGATTGGTTACCGCGGTAACAGCTCTAACAAACATTTCCACAAACACAGCAACTAATATTGCAAACACAGCAACCAACCAAAGCACAGGTGGTACTGAAACCCGTCCACGCAACATATCTCTGATGTACATCATTAAAACCTAA

Title	Authors	Date	PMID	Source
Ecological redundancy of diverse viral populations within a natural community	Gregory,A.C., LaButti,K., Copeland,A., Woyke,T. and Sullivan,M.B.	2015-03-20	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature