Phage RBP Database

Genbank accession

YP_009303388.1 [GenBank]

Protein name

head scaffolding protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MANENVAVYEPGQDISGRCSAGVTGKRFLKISGNRSSGNVAVAHADAGGRICGVSGRDAASGELVRVMRGSGRVVFVTAAANLAAFQEVEVGTNGQAIVKASGVAVGYAVTAATSGGDAEINLY

Physico‐chemical properties

protein length:	124 AA
molecular weight:	12360,67900 Da
isoelectric point:	7,79747
aromaticity:	0,04839
hydropathy:	0,15000

Domain architecture

YP_009303388.1

1 124 aa

STR 39–118 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR011231
STR

IPR011231

YP_009303388.1

1124 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_2156
STR

DC_2156

YP_009303388.1

1124 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR011231	STR	DC_0133	39	118	InterPro cluster	Bacteriophage VT1-Sakai, H0018	Central	Low	Positional only	4 proteins / 4 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009303388.1

1 124 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	10	10	0,0008
Central domain	11	113	104	0,0007
C-terminal	114	124	10	0,9961

Note: Constraints were applied during segmentation.
Sequence started with non-N-terminal domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Gordonia phage Schnabeltier [NCBI] · taxon 1821561

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host No host information

Genbank protein accession

YP_009303388.1 [NCBI]

Genbank nucleotide accession

NC_031255 [NCBI]

CDS location

range 5040 -> 5414
strand +

CDS

ATGGCCAACGAGAACGTCGCGGTCTACGAACCCGGCCAGGACATCTCCGGCCGCTGCTCGGCCGGGGTGACCGGCAAGCGGTTCCTCAAGATCTCCGGCAACCGCTCCAGCGGCAACGTCGCCGTCGCGCACGCCGACGCCGGCGGCCGCATCTGCGGTGTGTCCGGACGGGATGCCGCCAGCGGTGAGCTGGTGCGGGTCATGCGCGGCTCGGGGCGCGTCGTCTTCGTGACGGCCGCCGCGAACCTCGCTGCGTTCCAGGAGGTCGAGGTCGGCACGAATGGCCAGGCCATCGTCAAGGCATCGGGCGTGGCCGTCGGCTACGCCGTCACCGCAGCAACCAGCGGCGGCGACGCCGAGATCAACCTGTACTGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)