Phage RBP Database

Genbank accession

XYM57736.1 [GenBank]

Protein name

virion structural protein

RBP type

TF

Evidence RBPdetect

Probability 0,79

Seq2Symm

C3 confidence 0,979

C3	0,979
D3	0,010
C1	0,005

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MNRSNYSRIKSLYGGVVGSIQVMATPFTQSETDPNSQTWKDYVPGGFLPCDGTIRSARDYYALSQVLGVGSETKFKKPNSTIRDADLENNDLGQFQLPDLGSKVIIPSRSVGDYVNDLADDGETTRVGPAVEVFSNEGTQLTCDFIGNFEGVPKQVNYDMRSSPKYTFNTTSSTEFLDIENFQGHAHNISGFGIMNYSAQHQTGGDGKDRGRLSGNAGAGNFLDVSPVNTAFSSEHTHRIDKPVLYTHNFQYQHQDFDIPADGVFSTVNISTQEFKKLDRATTPFVIVMYIIKF

Physico‐chemical properties

protein length:	294 AA
molecular weight:	32481,51330 Da
isoelectric point:	5,22250
aromaticity:	0,10884
hydropathy:	-0,48776

Domain architecture

XYM57736.1

1 294 aa

ATT 13–100 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR037053
ATT

IPR037053

XYM57736.1

1294 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0350
STR

DC_0350

XYM57736.1

1294 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR037053	ATT	IPR037053	13	100	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits

Proteins with similar domain architecture

Phage

Synechococcus phage Sf-CH3 [NCBI] · taxon 3413214

Synechococcus phage Sf-CH3

Host

Synechococcus [NCBI] · taxon 1129

Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus

Genbank protein accession

XYM57736.1 [NCBI]

Genbank nucleotide accession

PV340851 [NCBI]

CDS location

range 36190 -> 37074
strand +

CDS

ATGAACCGCAGCAACTATTCAAGAATCAAATCACTGTATGGTGGCGTGGTAGGATCTATTCAGGTCATGGCGACACCTTTTACTCAATCTGAAACTGATCCTAACTCCCAAACTTGGAAAGATTATGTTCCAGGTGGATTTTTACCATGTGATGGTACAATCAGAAGTGCTAGAGATTATTATGCATTGTCTCAAGTATTAGGTGTTGGTAGCGAAACTAAATTTAAGAAACCTAATAGTACCATTCGTGATGCTGATCTAGAAAATAATGATCTAGGTCAGTTTCAGTTACCTGATCTTGGATCTAAAGTTATTATTCCAAGTAGATCTGTTGGTGATTATGTCAATGATCTTGCTGATGATGGTGAGACTACTAGAGTTGGTCCTGCTGTCGAAGTATTTTCTAATGAAGGTACACAATTAACTTGTGATTTTATTGGTAACTTTGAAGGTGTACCAAAGCAGGTTAACTATGATATGAGATCTAGTCCTAAGTATACTTTTAATACTACATCTAGTACAGAATTTCTGGACATTGAAAACTTCCAGGGTCACGCTCATAATATCTCTGGTTTTGGTATTATGAACTATAGTGCTCAGCACCAGACAGGTGGTGACGGTAAAGACAGAGGAAGACTATCAGGTAACGCTGGTGCTGGTAACTTTCTAGATGTTAGTCCTGTTAATACAGCATTTTCATCTGAACACACTCATAGAATTGACAAACCTGTTCTATACACCCACAACTTCCAGTATCAGCACCAAGATTTTGATATTCCTGCTGATGGTGTATTTTCTACCGTTAACATTTCTACCCAAGAGTTTAAAAAATTAGACAGAGCTACAACTCCATTTGTCATTGTGATGTATATTATCAAGTTCTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)