Phage RBP Database

Genbank accession

YP_004322994.1 [GenBank]

Protein name

baseplate wedge tail fiber protein connector

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,97

Protein sequence

MAKQSLGLGTAANDNTGDTLRAGGDKINDNFNEIYGAIGNGTNLSISLTNPANGQVLRYNGTSFIPSDYSNLTSALDVNGNSIVSSSNGNIALNPNGTGDVLIQVGSTTHTFDGATGTADFPSAIKYKNEYDALGSAPAAATYPGYFFTVDGDDKPYVNINITAGGVGDTRASLLTQYSGIDALADVDTTTVAPTSNQILKWNGSNWTPADETGGGGAATQNIFASVAGDTGSTTADSTSDTLTIAGGTNITTAVSGDTLTVNFSGTLTTTLAALTDTDVSGIVQGDSLFYNGTNWVPVRSPITWWELTAPDASGYNFTGPGFAAATADPDLYVMRGMTYAFDNTTGGAHPFRIQSTQGLSGTPYTTGQTGSGTTVLYWTVPMNAPSTLYYQCTIHAAMQGQINVVS

Physico‐chemical properties

protein length:	407 AA
molecular weight:	41895,10520 Da
isoelectric point:	4,05003
aromaticity:	0,08845
hydropathy:	-0,16708

Domain architecture

YP_004322994.1

1 407 aa

ATT 1–96 · STR 327–405 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR036240
STR

IPR036240 IPR008972

IPR008987
ATT

IPR008987 IPR008972

G3DSA:1.20.5.960
Unmapped

G3DSA:1.20.5.960

YP_004322994.1

1407 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0210
STR

DC_0210

YP_004322994.1

1407 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR036240	STR	IPR036240	1	61	Merged direct domain	Gp9-like superfamily	Central	Low	Positional only	146 proteins / 146 hits
IPR008987	ATT	DC_0752	3	96	InterPro cluster	Baseplate structural protein Gp9/Gp10, N-terminal domain	Central	Medium	Text match	242 proteins / 243 hits
G3DSA:1.20.5.960	Unmapped	-	13	44	Gene3D	Bacteriophage t4 gene product 9 (gp9)	-	-	-	-
IPR008972	STR	IPR008972	327	405	Merged direct domain	Cupredoxin	Central	Low	Positional only	3 proteins / 3 hits
IPR008972	STR	IPR008972	330	405	Merged direct domain	Cupredoxin	Central	Low	Positional only	3 proteins / 3 hits

Proteins with similar domain architecture

Phage

Synechococcus phage S-SM1 [NCBI] · taxon 444859

Uroviricota Caudoviricetes Pantevenvirales Thetisvirus Thetisvirus ssm1

Host

Synechococcus sp. WH 6501 [NCBI] · taxon 166310

Bacteria Cyanobacteria Oscillatoriophycideae Chroococcales Synechococcus

Genbank protein accession

YP_004322994.1 [NCBI]

Genbank nucleotide accession

NC_015282 [NCBI]

CDS location

range 74390 -> 75613
strand +

CDS

ATGGCTAAACAATCACTCGGTCTTGGAACCGCTGCTAATGATAATACTGGTGATACTCTTCGTGCTGGCGGCGATAAGATCAATGACAACTTTAATGAAATTTATGGTGCCATTGGTAACGGCACGAACCTCTCCATTAGTTTAACTAACCCTGCTAATGGACAGGTTCTTCGTTACAATGGAACGTCTTTCATACCATCTGATTATAGTAATCTAACGTCTGCCTTAGATGTTAATGGAAACTCGATTGTTTCCTCATCAAATGGTAATATTGCGTTGAACCCCAACGGAACGGGTGACGTTTTAATACAGGTTGGGAGCACTACTCACACTTTTGATGGTGCTACGGGAACAGCAGATTTTCCCTCAGCAATTAAGTATAAGAATGAATATGATGCATTAGGATCTGCTCCTGCTGCAGCAACTTATCCTGGATATTTCTTCACTGTTGATGGTGATGATAAACCGTATGTAAACATTAATATCACTGCTGGTGGTGTTGGTGATACTAGAGCATCTCTCCTGACTCAGTATTCTGGTATTGATGCCTTAGCAGATGTAGATACTACGACAGTAGCACCTACATCAAACCAAATCCTCAAGTGGAACGGATCTAATTGGACACCTGCGGATGAAACTGGTGGTGGTGGCGCTGCAACACAAAATATTTTTGCATCGGTTGCTGGTGATACAGGATCCACAACAGCAGATAGCACTAGTGATACGTTAACAATTGCTGGTGGAACAAATATTACAACTGCAGTTAGTGGAGATACTCTTACAGTTAACTTCAGTGGAACACTCACAACAACTCTAGCTGCTCTTACTGATACTGACGTTTCTGGTATCGTTCAGGGCGATTCATTATTCTATAATGGCACGAACTGGGTTCCTGTTCGTAGTCCTATCACTTGGTGGGAACTTACTGCACCTGATGCATCTGGTTACAACTTCACTGGACCAGGTTTTGCTGCAGCAACTGCAGATCCTGACCTATATGTGATGAGAGGAATGACATATGCATTTGATAACACTACAGGTGGTGCTCACCCCTTTAGAATTCAAAGCACTCAGGGTTTAAGTGGAACTCCGTATACCACAGGTCAAACTGGTAGCGGCACTACTGTTTTGTATTGGACTGTTCCTATGAACGCTCCTAGCACACTGTATTACCAGTGCACAATCCATGCTGCAATGCAAGGTCAAATCAACGTTGTAAGTTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)