Protein

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Genbank accession
UQT02954.1 [GenBank]
Protein name
pectin lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MPKIYYIDPSSRTNGDGTINKPFNSLNEIVKQPYPYTALIKRGTVERVSITLPSMTGQVERTTIGSYGSGIRPVLLPKSAGSPIITSTLVKHLLITDIDLTIDLFSYTSENAIFLRADSEGVGNNVADVGITNVDVIYQTTVVTKTKAFFIDAIGGANLTYSNDDLYIKNCNVYGGHWAAQINGGGAYYSINGGDTYRAKRMLIDNCSHIDGVGDSWMAMRANGEGKACITNCYSKSSAYRTDTSIYTAAIWMYGCENTGIEYCEVAGTLPNRYDKMGFDIDGNNKDVWVRYCYSHNNAGGFIMFADAESKGKNFASLAEAEQFLITEQHGIQNCVFEYCLSYNDGVARGGYGGRWPKITLVSNPVNCAVRNCTIIDTISKTDLHLVELLEYYYEPIWKKYPMVMENNVFYFKYPRYREGSGPPGEIGYGNFKNIIWRNNIFWTETGDPRDWNPRSGTVVNSIFTDPKLSYLTDVPPSGLEAAKLIKLLTGSAALNSGTTNSLPDILGNRGNNIGWLQ
Physico‐chemical
properties
protein length:518 AA
molecular weight: 57293,94360 Da
isoelectric point:5,79942
aromaticity:0,11390
hydropathy:-0,26409

Domains

Domains [InterPro]
IPR011050
STR
2–498
IPR011050
DC_1961
STR
2–518
DC_1961
IPR012334
STR
5–317
IPR012334
UQT02954.1
1 518
Architecture
STR
STR 2-518
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UQT02954.1
1 518
Domain Start End Length (AA) Confidence
N-terminal 1 15 15 0,7152
Central domain 16 483 469 0,9933
C-terminal 484 518 34 0,7062
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-15
Central
16-483
C-terminal
484-518

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage vB_SmaS-Totoro
[NCBI] 		2943840 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UQT02954.1 [NCBI]
Genbank nucleotide accession
ON287372 [NCBI]
CDS location
range 69959 -> 71515
strand +
CDS
ATGCCTAAAATTTATTACATCGACCCCTCTTCCCGCACTAACGGAGATGGTACAATTAACAAACCGTTCAACTCACTGAATGAAATTGTTAAGCAACCCTACCCGTATACTGCGTTGATTAAACGGGGAACAGTAGAGAGAGTCTCTATCACTCTACCTAGTATGACCGGACAAGTAGAGCGGACAACAATCGGCTCTTATGGTTCTGGTATTCGTCCGGTTCTTTTACCTAAGAGCGCAGGTAGTCCAATAATTACCTCAACACTAGTTAAACACCTGCTGATTACTGATATCGATTTGACGATCGATCTTTTCTCCTACACCTCAGAGAATGCGATCTTCCTTCGGGCAGACAGTGAAGGTGTTGGTAACAATGTTGCTGACGTAGGTATCACCAACGTCGACGTTATTTATCAGACTACCGTCGTGACTAAGACAAAGGCATTCTTTATCGATGCCATTGGCGGTGCTAATTTGACGTACAGTAATGATGACTTGTACATCAAGAATTGTAACGTCTACGGCGGACATTGGGCGGCGCAGATCAACGGAGGTGGTGCTTATTACAGCATTAACGGAGGCGATACCTATCGCGCTAAACGGATGTTAATCGATAACTGTTCCCACATCGATGGTGTTGGTGACTCATGGATGGCAATGCGTGCTAATGGTGAAGGTAAAGCTTGTATCACGAACTGTTATTCTAAGTCATCTGCTTACCGGACTGATACAAGCATCTATACCGCGGCCATCTGGATGTATGGGTGCGAGAATACTGGTATAGAGTACTGCGAAGTTGCAGGGACACTACCTAACCGTTACGACAAGATGGGATTCGATATCGACGGTAACAATAAAGATGTCTGGGTTCGTTACTGTTACAGCCACAACAACGCCGGCGGCTTCATCATGTTCGCCGACGCAGAAAGTAAAGGGAAGAACTTCGCTTCATTAGCTGAGGCAGAACAATTCCTTATTACGGAGCAGCACGGTATTCAGAATTGCGTATTCGAATACTGTCTGTCCTACAATGATGGCGTTGCTCGTGGTGGATATGGCGGACGCTGGCCTAAGATAACGCTCGTAAGTAACCCGGTTAATTGCGCAGTTCGTAACTGTACGATCATCGATACGATCAGTAAGACCGATCTACACCTAGTCGAGCTGCTGGAGTACTACTACGAACCTATCTGGAAGAAATACCCGATGGTGATGGAGAACAACGTGTTCTACTTCAAGTATCCTCGATACCGTGAAGGTAGCGGTCCTCCTGGGGAAATTGGTTATGGCAACTTCAAGAACATCATCTGGCGTAACAACATCTTCTGGACAGAGACAGGGGATCCACGCGATTGGAACCCTCGGTCAGGTACGGTAGTTAACTCTATCTTTACCGATCCTAAATTGTCTTACTTAACGGATGTTCCTCCGAGTGGCCTGGAAGCTGCTAAGTTGATTAAGTTGTTGACAGGCTCTGCTGCACTCAATAGCGGTACTACCAACTCATTACCGGACATCCTTGGTAATCGTGGTAACAACATCGGCTGGTTGCAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
46d132d75462dfdd6bde4534379adb13f0d565aef86466c7e0747536e1c49213
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8224
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50