Phage RBP Database

Genbank accession

XPO97406.1 [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,99

Seq2Symm

C3 confidence 1,000

C3	1,000
C1	0,030
D3	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSSGCGDVLSLADLQTAKKHQIFEAEVITGKSGGVAGGADIDYATNAVTGQTQKTMPAILRDIGFEPASFDFTTGGTLSTADRNKAVLWPMADGGDGDWYYWEGALPKVIPAASTPSSTGGIADGAWRPVGDIELRSQISDPDGAEKYPELQIARWRDEGDARGWGIAPGNPDNSSLINGAISELSSRGGGELLFRVPGVLLIKGPIVPRRGVICKASPGTVTIKLADNSNTGMVESYKFDTLRANSAHSIADDPDFTQDYGFDGFIFDGNGANQSKATLNYGVKMYGLRLTLKRCIIYNFAGIGLLTSHAGAGSGAYTIDKASIPACIDELEIINSFDENWIYEGPSDTPIGSVVTNENGDKNNPGTTPQTSRHFPGEPVHSVVVAANKAMQADYLNLNSPRFGKCFVAKDNTRLTIDTLITAGGWGNVEFGVNCNGVVKNNFSQANKINWGGVTKPFVLNYSNKLVITDTIIRRASGQDVGADGVFDTGGANWGTVANLQAATQGGHLFVADAVSIMIGQLKSVGIGGLGSDGLVSAALVTTENCDQLNCTMTFSNVSLAWRNKKNGLIGNFIATGDVGTGNNFAEGLTGTPALNKSSLMTMQAVFKDGTGTVKTNNFIGYGNIDLTSTGGKTVTIPHTLWRAPSVEEIQATLRHSSFTAPGTFSPVYISSFNATQVVLRVDVTTAATGTPVSQVVCRIN

Physico‐chemical properties

protein length:	702 AA
molecular weight:	73864,88740 Da
isoelectric point:	5,27622
aromaticity:	0,07835
hydropathy:	-0,12536

Domain architecture

XPO97406.1

1 702 aa

ATT 66–141 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.10.10.80
ATT

G3DSA:2.10.10.80

IPR040775
RBD

IPR040775

XPO97406.1

1702 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0018
ATT

DC_0018

XPO97406.1

1702 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	66	141	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR040775	RBD	DC_0821	96	132	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XPO97406.1

1 702 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	174	174	0,9913
Central domain	175	596	423	0,9921
C-terminal	597	702	105	0,9729

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Shigella phage phiSD1 [NCBI] · taxon 3385254

Shigella phage phiSD1

Host

Shigella dysenteriae [NCBI] · taxon 622

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella dysenteriae

Genbank protein accession

XPO97406.1 [NCBI]

Genbank nucleotide accession

PQ571306 [NCBI]

CDS location

range 7272 -> 9380
strand +

CDS

ATGTCAAGCGGATGCGGTGACGTTTTAAGCCTGGCGGATTTACAAACCGCCAAGAAACACCAGATTTTCGAAGCCGAGGTCATCACCGGTAAATCCGGTGGTGTCGCTGGTGGTGCTGATATTGATTACGCGACCAACGCTGTTACAGGCCAAACACAAAAGACGATGCCCGCGATTCTTCGAGATATTGGCTTCGAACCCGCATCTTTTGATTTTACTACAGGCGGGACCTTGTCTACGGCGGACAGAAACAAAGCCGTCCTGTGGCCTATGGCCGATGGTGGGGATGGCGATTGGTATTACTGGGAAGGTGCGCTGCCGAAGGTAATCCCTGCAGCTTCAACTCCTTCTTCAACTGGCGGTATTGCGGATGGGGCCTGGAGGCCAGTGGGTGATATTGAATTGCGCAGCCAAATATCAGACCCGGATGGCGCAGAAAAATACCCAGAACTGCAAATTGCACGTTGGCGGGATGAAGGAGATGCTCGTGGTTGGGGTATTGCACCGGGCAATCCGGATAACTCATCTTTGATTAATGGCGCAATTTCGGAGTTATCATCGCGCGGTGGTGGCGAGTTATTGTTCCGTGTTCCCGGTGTGCTCCTGATCAAAGGGCCAATAGTTCCTCGTCGCGGAGTTATCTGCAAAGCCTCACCCGGAACTGTGACCATTAAACTGGCGGATAACTCAAATACAGGCATGGTGGAGAGTTATAAGTTTGACACGTTGCGAGCAAACAGCGCGCATTCTATCGCCGACGATCCTGATTTCACACAGGATTACGGATTTGATGGTTTTATCTTTGACGGTAACGGAGCAAATCAGAGCAAAGCTACGTTGAATTATGGCGTTAAAATGTATGGTCTCCGCTTAACGCTCAAACGTTGCATTATTTATAACTTCGCTGGAATTGGTTTGTTGACATCTCACGCTGGTGCGGGCAGCGGTGCATATACGATTGATAAAGCGTCCATTCCTGCCTGTATTGATGAACTGGAGATCATAAATAGCTTTGATGAGAACTGGATTTACGAAGGGCCATCAGACACACCAATTGGCTCCGTCGTCACTAACGAGAATGGCGATAAAAACAACCCTGGCACCACACCACAAACATCACGGCATTTCCCGGGGGAGCCAGTTCACAGTGTGGTTGTTGCAGCAAACAAAGCCATGCAGGCTGATTACCTGAATTTAAACTCCCCCCGTTTTGGTAAGTGTTTTGTGGCGAAGGACAATACACGTCTGACCATTGATACACTAATCACCGCCGGTGGCTGGGGAAATGTGGAATTTGGTGTGAACTGTAACGGAGTGGTAAAAAATAACTTCAGCCAGGCCAACAAAATTAACTGGGGAGGTGTTACTAAGCCGTTTGTACTTAATTATTCTAACAAACTGGTAATCACCGACACCATTATTCGCCGGGCATCTGGACAGGATGTTGGAGCAGATGGCGTATTTGATACTGGCGGGGCAAACTGGGGGACGGTTGCAAACCTGCAAGCAGCAACTCAGGGCGGGCATTTGTTTGTCGCTGACGCCGTGAGCATCATGATTGGTCAATTAAAATCGGTCGGTATTGGTGGGTTAGGTAGTGATGGTTTGGTATCGGCAGCACTGGTGACGACAGAAAACTGCGATCAGCTTAACTGTACGATGACCTTTTCGAACGTTTCACTTGCGTGGCGAAACAAGAAGAATGGACTGATTGGCAATTTCATTGCCACTGGGGACGTTGGCACCGGCAACAATTTTGCAGAGGGATTAACCGGCACTCCAGCCCTGAACAAGTCATCATTGATGACGATGCAGGCGGTATTCAAGGATGGAACCGGCACAGTTAAAACAAATAACTTTATCGGCTATGGCAATATCGATCTGACTTCAACAGGCGGTAAAACCGTAACAATCCCTCACACGTTATGGCGAGCGCCCTCTGTCGAAGAGATTCAGGCGACACTCCGGCATAGTTCATTTACGGCGCCAGGTACATTTTCACCGGTTTACATCAGCTCATTTAACGCCACACAGGTGGTACTGAGAGTTGACGTAACTACTGCGGCTACCGGCACGCCTGTCTCACAGGTTGTATGCCGTATTAATTGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)