Protein

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Genbank accession
XPO97406.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLADLQTAKKHQIFEAEVITGKSGGVAGGADIDYATNAVTGQTQKTMPAILRDIGFEPASFDFTTGGTLSTADRNKAVLWPMADGGDGDWYYWEGALPKVIPAASTPSSTGGIADGAWRPVGDIELRSQISDPDGAEKYPELQIARWRDEGDARGWGIAPGNPDNSSLINGAISELSSRGGGELLFRVPGVLLIKGPIVPRRGVICKASPGTVTIKLADNSNTGMVESYKFDTLRANSAHSIADDPDFTQDYGFDGFIFDGNGANQSKATLNYGVKMYGLRLTLKRCIIYNFAGIGLLTSHAGAGSGAYTIDKASIPACIDELEIINSFDENWIYEGPSDTPIGSVVTNENGDKNNPGTTPQTSRHFPGEPVHSVVVAANKAMQADYLNLNSPRFGKCFVAKDNTRLTIDTLITAGGWGNVEFGVNCNGVVKNNFSQANKINWGGVTKPFVLNYSNKLVITDTIIRRASGQDVGADGVFDTGGANWGTVANLQAATQGGHLFVADAVSIMIGQLKSVGIGGLGSDGLVSAALVTTENCDQLNCTMTFSNVSLAWRNKKNGLIGNFIATGDVGTGNNFAEGLTGTPALNKSSLMTMQAVFKDGTGTVKTNNFIGYGNIDLTSTGGKTVTIPHTLWRAPSVEEIQATLRHSSFTAPGTFSPVYISSFNATQVVLRVDVTTAATGTPVSQVVCRIN
Physico‐chemical
properties
protein length:702 AA
molecular weight: 73864,88740 Da
isoelectric point:5,27622
aromaticity:0,07835
hydropathy:-0,12536

Domains

Domains [InterPro]
DC_0018
ATT
1–260
DC_0018
G3DSA:2.10.10.80
ATT
66–141
G3DSA:2.10.10.80
IPR040775
RBD
96–132
IPR040775
XPO97406.1
1 702
Architecture
ATT
ATT 1-260 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPO97406.1
1 702
Domain Start End Length (AA) Confidence
N-terminal 1 174 174 0,9913
Central domain 175 596 423 0,9921
C-terminal 597 702 105 0,9729
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-174
Central
175-596
C-terminal
597-702

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage phiSD1
[NCBI] 		3385254 Viruses >
Host Shigella dysenteriae
[NCBI] 		622 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPO97406.1 [NCBI]
Genbank nucleotide accession
PQ571306 [NCBI]
CDS location
range 7272 -> 9380
strand +
CDS
ATGTCAAGCGGATGCGGTGACGTTTTAAGCCTGGCGGATTTACAAACCGCCAAGAAACACCAGATTTTCGAAGCCGAGGTCATCACCGGTAAATCCGGTGGTGTCGCTGGTGGTGCTGATATTGATTACGCGACCAACGCTGTTACAGGCCAAACACAAAAGACGATGCCCGCGATTCTTCGAGATATTGGCTTCGAACCCGCATCTTTTGATTTTACTACAGGCGGGACCTTGTCTACGGCGGACAGAAACAAAGCCGTCCTGTGGCCTATGGCCGATGGTGGGGATGGCGATTGGTATTACTGGGAAGGTGCGCTGCCGAAGGTAATCCCTGCAGCTTCAACTCCTTCTTCAACTGGCGGTATTGCGGATGGGGCCTGGAGGCCAGTGGGTGATATTGAATTGCGCAGCCAAATATCAGACCCGGATGGCGCAGAAAAATACCCAGAACTGCAAATTGCACGTTGGCGGGATGAAGGAGATGCTCGTGGTTGGGGTATTGCACCGGGCAATCCGGATAACTCATCTTTGATTAATGGCGCAATTTCGGAGTTATCATCGCGCGGTGGTGGCGAGTTATTGTTCCGTGTTCCCGGTGTGCTCCTGATCAAAGGGCCAATAGTTCCTCGTCGCGGAGTTATCTGCAAAGCCTCACCCGGAACTGTGACCATTAAACTGGCGGATAACTCAAATACAGGCATGGTGGAGAGTTATAAGTTTGACACGTTGCGAGCAAACAGCGCGCATTCTATCGCCGACGATCCTGATTTCACACAGGATTACGGATTTGATGGTTTTATCTTTGACGGTAACGGAGCAAATCAGAGCAAAGCTACGTTGAATTATGGCGTTAAAATGTATGGTCTCCGCTTAACGCTCAAACGTTGCATTATTTATAACTTCGCTGGAATTGGTTTGTTGACATCTCACGCTGGTGCGGGCAGCGGTGCATATACGATTGATAAAGCGTCCATTCCTGCCTGTATTGATGAACTGGAGATCATAAATAGCTTTGATGAGAACTGGATTTACGAAGGGCCATCAGACACACCAATTGGCTCCGTCGTCACTAACGAGAATGGCGATAAAAACAACCCTGGCACCACACCACAAACATCACGGCATTTCCCGGGGGAGCCAGTTCACAGTGTGGTTGTTGCAGCAAACAAAGCCATGCAGGCTGATTACCTGAATTTAAACTCCCCCCGTTTTGGTAAGTGTTTTGTGGCGAAGGACAATACACGTCTGACCATTGATACACTAATCACCGCCGGTGGCTGGGGAAATGTGGAATTTGGTGTGAACTGTAACGGAGTGGTAAAAAATAACTTCAGCCAGGCCAACAAAATTAACTGGGGAGGTGTTACTAAGCCGTTTGTACTTAATTATTCTAACAAACTGGTAATCACCGACACCATTATTCGCCGGGCATCTGGACAGGATGTTGGAGCAGATGGCGTATTTGATACTGGCGGGGCAAACTGGGGGACGGTTGCAAACCTGCAAGCAGCAACTCAGGGCGGGCATTTGTTTGTCGCTGACGCCGTGAGCATCATGATTGGTCAATTAAAATCGGTCGGTATTGGTGGGTTAGGTAGTGATGGTTTGGTATCGGCAGCACTGGTGACGACAGAAAACTGCGATCAGCTTAACTGTACGATGACCTTTTCGAACGTTTCACTTGCGTGGCGAAACAAGAAGAATGGACTGATTGGCAATTTCATTGCCACTGGGGACGTTGGCACCGGCAACAATTTTGCAGAGGGATTAACCGGCACTCCAGCCCTGAACAAGTCATCATTGATGACGATGCAGGCGGTATTCAAGGATGGAACCGGCACAGTTAAAACAAATAACTTTATCGGCTATGGCAATATCGATCTGACTTCAACAGGCGGTAAAACCGTAACAATCCCTCACACGTTATGGCGAGCGCCCTCTGTCGAAGAGATTCAGGCGACACTCCGGCATAGTTCATTTACGGCGCCAGGTACATTTTCACCGGTTTACATCAGCTCATTTAACGCCACACAGGTGGTACTGAGAGTTGACGTAACTACTGCGGCTACCGGCACGCCTGTCTCACAGGTTGTATGCCGTATTAATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
406dae5b830eab0c9e812b31c3acd3976fcca4a28910743d7b7520c8ba522a2d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7304
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50