Phage RBP Database

Genbank accession

AYP28456.1 [GenBank]

Protein name

putative tail fiber protein

RBP type

TF

Evidence RBPdetect

Probability 0,88

Seq2Symm

C1 confidence 0,997

C1	0,997
C2	0,004
C3	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MPKIKILVTPYVVKNKPETERNHVVTGVADGWEKTSLNADPNEILTESKGLDTLLTDCNLKPDGTTKIDPSKPIGKEVIIDIYDPDAVPVQTVTVTPDTATGTVGQQLTFTAEILPANATYKDVEWSSSDEAKAKSLGNGVFDLKAAGTGVIVSATSIDGGVIGEAELTITAAVVAVTGVTLSPKTKTIAVGEKFTLAATVAPANATNKTVTYTSAAPATATVNATTGEVEGKASGTVAITGKTADGNKTDVCNVTVS

Physico‐chemical properties

protein length:	258 AA
molecular weight:	26432,47990 Da
isoelectric point:	4,77694
aromaticity:	0,03488
hydropathy:	-0,03101

Domain architecture

AYP28456.1

1 258 aa

STR 86–258

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.60.40.1080
STR

G3DSA:2.60.40.1080 G3DSA:2.60.40.1080

IPR008964
RBD

IPR008964 IPR008964

IPR003343
STR

IPR003343 IPR003343

IPR003343
STR

IPR003343 IPR003343

AYP28456.1

1258 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0078
STR

DC_0078 DC_1711

AYP28456.1

1258 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	86	172	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	87	160	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	89	157	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR003343	STR	DC_0008	89	167	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	173	258	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	174	257	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	176	253	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR003343	STR	DC_0008	176	254	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits

Proteins with similar domain architecture

Phage

Serratia phage vB_SmaA_3M [NCBI] · taxon 2419930

Uroviricota Caudoviricetes Pantevenvirales Ackermannviridae Miltonvirus Miltonvirus 3M

Host

Serratia marcescens [NCBI] · taxon 615

Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens

Genbank protein accession

AYP28456.1 [NCBI]

Genbank nucleotide accession

MH929319 [NCBI]

CDS location

range 156093 -> 156869
strand -

CDS

ATGCCAAAGATAAAGATTCTTGTGACGCCTTATGTCGTCAAAAACAAGCCTGAGACCGAGCGTAACCACGTCGTGACAGGTGTTGCTGACGGTTGGGAAAAGACCAGCCTGAACGCAGACCCCAACGAAATCCTGACCGAGTCAAAAGGTCTGGACACTCTGTTGACCGACTGCAACCTGAAGCCGGACGGCACTACCAAAATCGACCCAAGCAAGCCTATCGGTAAAGAAGTCATTATCGACATCTACGATCCCGATGCGGTTCCTGTGCAGACCGTTACTGTAACCCCTGACACTGCGACAGGCACTGTTGGCCAGCAGCTGACCTTCACGGCGGAAATCTTGCCGGCTAACGCCACCTACAAAGATGTCGAATGGTCGAGCTCCGACGAAGCGAAAGCCAAATCACTGGGCAACGGCGTTTTCGATCTGAAAGCTGCCGGTACGGGCGTCATCGTGTCTGCGACTTCCATCGACGGTGGTGTGATCGGTGAAGCCGAGCTGACCATTACTGCAGCCGTGGTTGCTGTCACTGGTGTGACCCTGTCTCCTAAGACCAAAACGATCGCTGTTGGTGAGAAGTTTACCCTGGCTGCAACCGTAGCCCCGGCGAATGCCACCAACAAGACCGTTACCTACACCAGCGCCGCTCCTGCGACGGCTACCGTGAATGCCACCACTGGTGAAGTGGAAGGCAAGGCATCTGGTACTGTTGCCATCACCGGTAAAACTGCTGACGGTAACAAGACCGACGTCTGCAACGTAACGGTGTCGTGA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)