Phage RBP Database

Genbank accession

YP_009005441.1 [GenBank]

Protein name

tail collar fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,96

Protein sequence

MATNTLNHISDESKYKTFNPAGTSFPANITNVQSALAALKPIAVNGVPDATETVKGIIRIATQQEVNDGDSANTVVTPKTLKERLGNPQASTTVIGLTRYATTAEATAGSIGNAAVVPTGLKASIDNAFATRISKESVLGVIKIATVAMAEAGTDDTSAMTPLKTQRAIAKATAVLPVYGPATESVSGTVRIATNGQVAQGTLRDGYAVSPSGLASLTATSSRRGLARSATIAEVNANTAGDIFVTPNGLNQRVGTTSTKGLVKLTTTVGSGDANTALAYNADVVHTRGGQTINGTTTFGAARVNGRLDVGSGFINNQQIATVNMLVDSVPIGTIIMWPGHNPPSSDWMHCHGALLNKGDAQYSTLYSIIGTIYGGDATRFALPDMRGMFPRGVGKSNIMNQYSGNDSKGKPGLGAGCGNASLGQSMPQSVRKHKHESGWGEHHKRNEARNGCTVRNGYVGSNRTDYDNYKWFTNDGSEVEAANIRDGFGTMNTEGLMGDENRPWSIALNFVIKVR

Physico‐chemical properties

protein length:	516 AA
molecular weight:	53953,77070 Da
isoelectric point:	9,24253
aromaticity:	0,05426
hydropathy:	-0,26764

Domain architecture

YP_009005441.1

1 516 aa

STR 246–318 · ATT 319–391 · STR 392–515 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

SSF69349
STR

SSF69349 IPR044916

G3DSA:2.10.280.10
Unmapped

G3DSA:2.10.280.10 IPR037053 IPR027448

IPR015173
STR

IPR015173 SSF88874

IPR011083
ATT

IPR011083

YP_009005441.1

1516 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0176
STR

DC_0176

YP_009005441.1

1516 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
SSF69349	STR	SSF69349	246	342	Merged direct domain	SSF69349	Central	Low	Positional only	153 proteins / 153 hits
G3DSA:2.10.280.10	Unmapped	-	246	283	Gene3D	None	-	-	-	-
IPR015173	STR	DC_0719	248	299	InterPro cluster	Bacteriophage T4, Gp12	Central	Low	Positional only	349 proteins / 349 hits
IPR037053	ATT	IPR037053	319	387	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
SSF88874	STR	SSF88874	323	515	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR011083	ATT	DC_0235	333	391	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
IPR044916	STR	IPR044916	388	508	Merged direct domain	Short tail fibre protein, C-terminal superfamily	Central	Low	Positional only	2 proteins / 2 hits
IPR027448	RBD	DC_0877	428	515	InterPro cluster	Short tail fibre protein, C-terminal	C-terminal	High	Text match	424 proteins / 427 hits

Proteins with similar domain architecture

Phage

Enterobacter phage PG7 [NCBI] · taxon 1455074

Uroviricota Caudoviricetes Pantevenvirales Tevenvirinae Karamvirus

Host

Enterobacter cloacae [NCBI] · taxon 550

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_009005441.1 [NCBI]

Genbank nucleotide accession

NC_023561.1 [NCBI]

CDS location

range 94926 -> 96476
strand +

CDS

ATGGCTACTAATACTCTAAACCACATAAGTGACGAATCAAAATATAAAACATTTAACCCGGCTGGAACTAGTTTTCCAGCCAACATAACAAACGTTCAATCAGCATTAGCCGCATTAAAGCCAATAGCAGTTAACGGCGTTCCTGACGCAACTGAAACTGTTAAAGGAATAATTCGTATTGCTACACAGCAAGAAGTTAATGATGGTGATTCAGCTAATACTGTAGTTACTCCAAAAACTTTAAAAGAACGTCTTGGTAATCCGCAAGCTTCTACTACAGTAATTGGTTTAACTCGATATGCTACTACAGCTGAAGCCACTGCGGGGTCTATTGGCAATGCTGCGGTTGTTCCGACTGGATTAAAAGCTTCAATTGACAATGCGTTTGCTACTCGTATTTCTAAAGAGTCAGTTTTAGGTGTAATTAAAATTGCTACAGTTGCAATGGCTGAAGCCGGTACTGATGATACCTCGGCAATGACTCCATTGAAAACCCAAAGAGCAATTGCAAAAGCAACAGCAGTTCTTCCAGTTTATGGACCAGCGACAGAATCAGTAAGTGGTACTGTGCGTATTGCTACTAACGGGCAAGTTGCTCAAGGAACTCTAAGAGACGGGTATGCCGTATCTCCAAGTGGATTAGCCTCTTTAACAGCTACATCTTCTCGCAGAGGTTTAGCTCGTTCCGCTACTATCGCCGAAGTTAATGCAAATACCGCCGGAGATATTTTTGTTACTCCAAATGGATTGAACCAAAGAGTTGGTACTACTTCAACAAAGGGTCTTGTTAAATTAACTACTACTGTAGGCTCAGGTGACGCAAATACTGCATTAGCATATAACGCTGACGTTGTTCATACTCGCGGCGGACAAACAATTAATGGAACCACAACGTTTGGTGCTGCGCGAGTAAATGGTCGTCTTGATGTTGGTTCTGGTTTTATTAACAACCAGCAAATTGCTACAGTAAACATGTTAGTTGATTCCGTTCCAATTGGAACAATTATCATGTGGCCAGGACATAACCCTCCAAGCTCAGATTGGATGCATTGCCATGGAGCGTTATTGAATAAAGGAGATGCCCAATATTCTACGTTGTACAGCATTATTGGCACTATATACGGTGGAGACGCTACTCGGTTCGCTCTTCCTGATATGCGCGGTATGTTCCCTCGCGGTGTTGGTAAGTCCAACATCATGAACCAATATTCAGGAAACGACTCAAAAGGTAAACCTGGTCTTGGCGCTGGGTGTGGTAACGCTTCATTAGGTCAATCAATGCCGCAATCTGTTCGTAAACATAAACACGAGTCGGGTTGGGGAGAGCATCACAAACGCAATGAAGCTCGTAATGGCTGTACTGTAAGAAATGGTTATGTAGGGTCTAATAGAACTGACTACGATAACTATAAGTGGTTTACTAACGACGGTAGTGAAGTAGAAGCTGCTAATATTCGTGATGGATTTGGTACAATGAATACAGAAGGTCTAATGGGCGATGAAAACCGTCCTTGGTCAATTGCTCTAAACTTTGTAATAAAAGTAAGATAA

Title	Authors	Date	PMID	Source
Characterization of a Potential Antibacterial Agent, phage PG7, for the Treatment of Enterobacter cloacae Infection in Mice	Wang,S.W., Jin,J., Chen,S.J., Zhang,G., Li,Z.J., Li,Y.H., Wang,X.T., Wang,J., Wang,S.M., Wang,Z.Q. and Zhao,G.Q.	2018-02	—	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature