Phage RBP Database

Genbank accession

XNX25668.1 [GenBank]

Protein name

tail protein

RBP type

TSP

Evidence RBPdetect

Probability 0,73

TF

Evidence RBPdetect2

Probability 0,89

Protein sequence

MEFIVIQGDKTLNLNNRKPLCSVTKAEHRQSLLSEDVINITVESKTPLALQVGNYIEYENRRYTLNSAPKVKKEQGYYTYYLVFEGVQYLLRDKVYFNLDAQGFQNTADFPLTGEINIFLTTLITNINSISDFTWVLGEYPQNTETKTLTFNNENCLAVLQKICQEYDTEFEIKQDLERKSYTLNIKKIGETLNQTFEYGKGNGLYSLSRENANDNVVTRLYVFGSTNNIKSGYRDYSQRLRLPISHGKDYIQDDAKVKLFGLKEGVKNFDDIKPTFKGIVSGVTNLENGSQEIEVSNMDFDLNETDSNGTKYLLNDTPAKLHINKGNLAGYEFELLKNGGYNHATKTFRVKQFTDERGQKFPEAGSVFSFSVGDEFTLLDIAMPEQYITNAENKLLEEGQKEYEKQSVNNLKYNLELDPLYLQQIGANTSIFFKIGDYIRVIDEPLKIDKTTRIVDITRDLLDEYNYKIGIADTYEISFVASLLTEIKDTKTVIKTQEQINRQNYLNGYRNQKEFEENVFDADGNFDPTKIRHQSIEAYMLSTGARSQQFALENISLNPNIEGNPSRTFISGGKLVHFSLEDDIREWNILPYSRNDLLNQVYYVYAKCSRGNSMGVWHITTEQIRFDSRSDYYYFLCYLLYTPKDGKREAEAMYGNVFMHGGQITAGRIKSLNGQTYFDLDSGEIAGTIKFKSGNGYVEVGSAIQQVVDAVSVGGRNLIRNSNIKGVVDGFPELEIIEPLVIGKEYTLSFIAKKVGEGIGWVSVQPPLDWRDEVLNTRVTVTSNEYQEYKSTFIAKSSQGQKVWIYSADYYKIDFKGGIKLEKGNKATDWTPAPEDVEQEIIAVKSKVNQIDNLGTMAWQNSVEKAMLGSTIVQGGYIKTELLNASAIVSNGGGATSAELNNAINSIIIGGRNLVLDSKKTITHSDYNFSYEFEDDFSKIQGQTITISIDIEVSDITSGVRIGFEPSFLFQDGSRMYLRCWKYLNLGESFKGRISKTYTIPNKPIQSMEQKGMYVQVQGRITKVSNPKFELGNKATDWTPNPLDIEVQFANLQQGIANMQTSLSDVKTKTDNFASIQGGLMMANLMSVGSNQANQNAFISGITDEGAMSVRFGAGANYANKHNAPFRVLDNGKVYGSDMEITGGKIARFNISGNTLSGQGIADPNDYLEIKSSGSILSYKKSLSSGRESYALINNDDSILNGNKNNILRLWGRDVNNYTPYNALSIRADGQYATALNIESGDIRVGGEVGYTGSVFLGNRLVYIKNGIIIRV

Physico‐chemical properties

protein length:	1273 AA
molecular weight:	142986,88220 Da
isoelectric point:	5,37728
aromaticity:	0,10448
hydropathy:	-0,43205

Domain architecture

XNX25668.1

1 1273 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR007119
Unmapped

IPR007119

XNX25668.1

11273 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1026
ATT

DC_1026 DC_0647

DC_0650
STR

DC_0650

XNX25668.1

11273 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR007119	Unmapped	-	135	260	InterPro	Phage tail spike protein, N-terminal domain	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XNX25668.1

1 1273 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	748	748	0,9439
Central domain	749	1172	425	0,4361
C-terminal	1173	1273	100	0,5863

Note: Constraints were applied during segmentation.
Fixed 20 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Riemerella phage vB_RanS_CRP34 [NCBI] · taxon 3384970

Viruses unclassified bacterial viruses

Host

Riemerella anatipestifer [NCBI] · taxon 34085

cellular organisms Bacteria Pseudomonadati FCB group Bacteroidota/Chlorobiota group Bacteroidota

Genbank protein accession

XNX25668.1 [NCBI]

Genbank nucleotide accession

PQ782953 [NCBI]

CDS location

range 19686 -> 23507
strand +

CDS

ATGGAGTTTATAGTCATACAAGGAGATAAGACCCTTAACCTTAATAATAGAAAACCTTTATGTTCGGTTACCAAAGCCGAACATAGACAGTCTTTGTTATCAGAAGATGTAATAAATATTACTGTAGAAAGTAAAACTCCTCTTGCTTTGCAAGTGGGCAACTATATAGAATATGAGAACCGAAGATATACACTCAACTCTGCACCAAAGGTAAAAAAGGAGCAGGGGTATTATACCTATTATTTAGTTTTTGAGGGCGTACAGTATCTATTGAGAGATAAGGTGTATTTCAACTTGGACGCTCAAGGCTTCCAAAATACGGCGGATTTTCCTTTAACGGGAGAAATAAACATTTTCCTTACGACGCTAATCACAAATATCAATTCCATTTCAGATTTTACTTGGGTTTTGGGTGAATATCCACAAAATACGGAAACTAAAACGCTGACTTTTAATAATGAAAACTGTTTAGCGGTTTTACAAAAAATATGTCAGGAATACGATACCGAGTTTGAAATCAAGCAGGATTTAGAGAGAAAATCTTACACGCTCAACATTAAGAAGATAGGCGAAACTTTAAACCAAACCTTTGAATATGGAAAAGGAAATGGGCTTTATTCTTTAAGTAGAGAAAATGCGAATGATAATGTGGTTACTCGGCTTTATGTTTTCGGTTCAACGAATAATATCAAAAGTGGATACCGGGATTATTCACAGCGTTTGCGGTTGCCTATTTCTCACGGAAAGGATTATATTCAGGACGATGCTAAGGTAAAATTGTTCGGCTTAAAAGAGGGCGTTAAAAATTTTGACGACATCAAACCTACTTTTAAGGGGATAGTATCAGGCGTTACCAATTTGGAAAACGGCTCGCAAGAGATAGAAGTTTCTAATATGGACTTTGACCTGAACGAAACCGACAGCAACGGAACAAAGTATTTATTAAATGATACTCCTGCGAAGCTCCATATAAACAAAGGAAATTTGGCAGGATATGAATTTGAGTTGCTTAAAAACGGAGGCTACAACCACGCCACTAAGACTTTTAGAGTAAAGCAATTTACAGACGAAAGAGGACAAAAGTTTCCAGAAGCAGGTTCCGTGTTTTCATTTTCGGTTGGAGATGAGTTCACATTGTTAGATATTGCAATGCCCGAACAGTACATTACAAATGCCGAAAACAAACTCCTTGAAGAGGGACAAAAGGAATACGAAAAACAATCGGTAAACAACCTTAAATATAATTTAGAGTTAGACCCTCTGTATCTGCAACAGATAGGGGCTAATACGTCTATTTTCTTTAAAATTGGGGATTATATCCGTGTGATAGATGAACCGCTTAAAATAGATAAAACGACACGCATAGTAGATATTACGAGGGACTTATTAGATGAATATAATTACAAAATAGGCATTGCGGACACTTACGAAATCAGCTTTGTAGCAAGTCTACTTACCGAAATTAAGGACACTAAAACGGTTATAAAAACGCAGGAGCAAATTAACCGACAAAACTATTTAAACGGCTACCGTAATCAAAAGGAGTTTGAAGAAAATGTTTTTGATGCAGATGGCAATTTTGACCCAACCAAAATTAGACATCAAAGTATTGAAGCCTATATGCTTTCAACAGGGGCAAGAAGCCAACAATTTGCATTAGAAAATATAAGTCTGAATCCTAACATAGAGGGAAATCCTTCAAGAACATTTATTAGCGGCGGGAAATTGGTTCATTTTTCCTTAGAAGACGATATTAGAGAGTGGAACATATTGCCATACAGCCGTAATGACCTGTTAAATCAAGTTTACTATGTCTATGCAAAATGTTCAAGAGGAAATAGTATGGGGGTATGGCATATCACCACCGAGCAGATAAGGTTTGATAGTCGGTCAGATTATTATTATTTCTTGTGTTACTTACTCTACACACCAAAAGACGGTAAACGAGAAGCAGAAGCAATGTACGGTAATGTATTTATGCACGGAGGGCAAATAACGGCAGGGAGAATTAAATCGCTCAACGGACAAACCTATTTTGATTTGGATAGTGGGGAAATAGCAGGAACGATTAAGTTCAAAAGCGGTAATGGTTATGTGGAAGTTGGGAGTGCTATACAACAAGTAGTAGATGCGGTGAGTGTAGGAGGTAGAAACTTGATTAGAAACTCAAATATAAAAGGGGTAGTCGATGGATTCCCTGAACTTGAAATCATAGAACCTTTGGTTATAGGCAAGGAATACACACTATCGTTTATTGCAAAAAAAGTAGGGGAAGGGATAGGTTGGGTATCTGTGCAACCTCCCCTCGATTGGAGAGATGAAGTTTTAAATACTCGTGTTACTGTAACTTCAAACGAATACCAAGAGTATAAATCTACTTTTATAGCCAAATCCTCTCAAGGTCAAAAGGTTTGGATTTATTCGGCAGATTATTACAAGATTGATTTTAAAGGAGGTATAAAATTAGAAAAGGGTAATAAAGCTACCGACTGGACACCTGCACCAGAAGATGTGGAGCAGGAAATAATAGCGGTAAAGTCAAAAGTTAATCAAATAGATAATCTCGGTACAATGGCGTGGCAGAACTCTGTGGAAAAAGCGATGTTGGGTAGTACGATAGTACAAGGAGGCTATATCAAAACAGAGCTATTAAACGCTTCGGCAATAGTGAGTAATGGCGGAGGAGCGACTTCGGCAGAATTAAATAATGCCATCAATAGTATCATTATCGGGGGTCGGAATTTAGTATTAGATTCTAAGAAAACGATTACCCATTCAGATTATAATTTTAGCTATGAGTTTGAAGACGATTTTTCTAAAATACAAGGGCAGACAATCACTATTTCAATAGATATAGAGGTTTCGGATATAACTTCTGGAGTTAGAATAGGTTTTGAACCATCGTTTTTATTTCAAGACGGAAGTAGAATGTATTTGAGATGTTGGAAATACTTGAACTTGGGAGAAAGTTTTAAAGGGCGTATTTCAAAAACATACACTATTCCCAACAAACCAATTCAATCAATGGAACAAAAAGGTATGTATGTACAGGTTCAGGGGAGAATAACAAAAGTATCAAATCCAAAATTTGAATTGGGTAACAAAGCAACGGATTGGACACCAAATCCGTTGGATATAGAGGTACAGTTTGCCAACCTTCAACAAGGAATAGCTAATATGCAAACCTCTTTGTCTGACGTGAAGACCAAGACCGATAACTTCGCCTCTATTCAAGGCGGGTTGATGATGGCTAACTTAATGTCAGTCGGAAGCAACCAAGCTAATCAAAACGCTTTTATTAGTGGAATAACAGACGAGGGAGCAATGAGCGTGAGGTTTGGAGCAGGAGCTAACTATGCCAATAAACATAACGCCCCGTTTAGGGTGCTGGATAATGGGAAAGTTTATGGCTCTGATATGGAAATTACGGGTGGTAAAATAGCAAGGTTCAATATTAGCGGAAATACACTTTCGGGGCAAGGAATAGCAGACCCAAACGACTATTTAGAAATAAAGTCATCTGGAAGCATACTTTCATATAAAAAAAGTCTTTCATCTGGGAGAGAAAGCTATGCTCTCATCAATAATGATGATAGTATTTTAAACGGAAATAAAAACAATATACTTCGGCTCTGGGGGCGTGATGTGAACAATTACACGCCCTACAACGCTCTATCTATAAGGGCAGACGGACAGTATGCTACTGCCTTAAATATAGAATCGGGAGATATTCGTGTGGGTGGAGAGGTAGGATATACAGGTTCGGTCTTTTTAGGAAATAGACTAGTCTATATAAAAAATGGAATAATCATAAGAGTATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)