Protein

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Genbank accession
XNX25668.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,73
TF
Evidence RBPdetect2
Probability 0,83
Protein sequence
MEFIVIQGDKTLNLNNRKPLCSVTKAEHRQSLLSEDVINITVESKTPLALQVGNYIEYENRRYTLNSAPKVKKEQGYYTYYLVFEGVQYLLRDKVYFNLDAQGFQNTADFPLTGEINIFLTTLITNINSISDFTWVLGEYPQNTETKTLTFNNENCLAVLQKICQEYDTEFEIKQDLERKSYTLNIKKIGETLNQTFEYGKGNGLYSLSRENANDNVVTRLYVFGSTNNIKSGYRDYSQRLRLPISHGKDYIQDDAKVKLFGLKEGVKNFDDIKPTFKGIVSGVTNLENGSQEIEVSNMDFDLNETDSNGTKYLLNDTPAKLHINKGNLAGYEFELLKNGGYNHATKTFRVKQFTDERGQKFPEAGSVFSFSVGDEFTLLDIAMPEQYITNAENKLLEEGQKEYEKQSVNNLKYNLELDPLYLQQIGANTSIFFKIGDYIRVIDEPLKIDKTTRIVDITRDLLDEYNYKIGIADTYEISFVASLLTEIKDTKTVIKTQEQINRQNYLNGYRNQKEFEENVFDADGNFDPTKIRHQSIEAYMLSTGARSQQFALENISLNPNIEGNPSRTFISGGKLVHFSLEDDIREWNILPYSRNDLLNQVYYVYAKCSRGNSMGVWHITTEQIRFDSRSDYYYFLCYLLYTPKDGKREAEAMYGNVFMHGGQITAGRIKSLNGQTYFDLDSGEIAGTIKFKSGNGYVEVGSAIQQVVDAVSVGGRNLIRNSNIKGVVDGFPELEIIEPLVIGKEYTLSFIAKKVGEGIGWVSVQPPLDWRDEVLNTRVTVTSNEYQEYKSTFIAKSSQGQKVWIYSADYYKIDFKGGIKLEKGNKATDWTPAPEDVEQEIIAVKSKVNQIDNLGTMAWQNSVEKAMLGSTIVQGGYIKTELLNASAIVSNGGGATSAELNNAINSIIIGGRNLVLDSKKTITHSDYNFSYEFEDDFSKIQGQTITISIDIEVSDITSGVRIGFEPSFLFQDGSRMYLRCWKYLNLGESFKGRISKTYTIPNKPIQSMEQKGMYVQVQGRITKVSNPKFELGNKATDWTPNPLDIEVQFANLQQGIANMQTSLSDVKTKTDNFASIQGGLMMANLMSVGSNQANQNAFISGITDEGAMSVRFGAGANYANKHNAPFRVLDNGKVYGSDMEITGGKIARFNISGNTLSGQGIADPNDYLEIKSSGSILSYKKSLSSGRESYALINNDDSILNGNKNNILRLWGRDVNNYTPYNALSIRADGQYATALNIESGDIRVGGEVGYTGSVFLGNRLVYIKNGIIIRV
Physico‐chemical
properties
protein length:1273 AA
molecular weight: 142986,88220 Da
isoelectric point:5,37728
aromaticity:0,10448
hydropathy:-0,43205

Domains

Domains [InterPro]
DC_1026
ATT
1–192
DC_1026 DC_0647
IPR007119
Unmapped
135–260
IPR007119 DC_0650
XNX25668.1
1 1273
Architecture
ATT
STR
ATT 1-192 | STR 360-1197 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XNX25668.1
1 1273
Domain Start End Length (AA) Confidence
N-terminal 1 748 748 0,9439
Central domain 749 1172 425 0,4361
C-terminal 1173 1273 100 0,5863
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-748
Central
749-1172
C-terminal
1173-1273

Taxonomy

  Name Taxonomy ID Lineage
Phage Riemerella phage vB_RanS_CRP34
[NCBI] 		3384970 Viruses > unclassified bacterial viruses >
Host Riemerella anatipestifer
[NCBI] 		34085 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XNX25668.1 [NCBI]
Genbank nucleotide accession
PQ782953 [NCBI]
CDS location
range 19686 -> 23507
strand +
CDS
ATGGAGTTTATAGTCATACAAGGAGATAAGACCCTTAACCTTAATAATAGAAAACCTTTATGTTCGGTTACCAAAGCCGAACATAGACAGTCTTTGTTATCAGAAGATGTAATAAATATTACTGTAGAAAGTAAAACTCCTCTTGCTTTGCAAGTGGGCAACTATATAGAATATGAGAACCGAAGATATACACTCAACTCTGCACCAAAGGTAAAAAAGGAGCAGGGGTATTATACCTATTATTTAGTTTTTGAGGGCGTACAGTATCTATTGAGAGATAAGGTGTATTTCAACTTGGACGCTCAAGGCTTCCAAAATACGGCGGATTTTCCTTTAACGGGAGAAATAAACATTTTCCTTACGACGCTAATCACAAATATCAATTCCATTTCAGATTTTACTTGGGTTTTGGGTGAATATCCACAAAATACGGAAACTAAAACGCTGACTTTTAATAATGAAAACTGTTTAGCGGTTTTACAAAAAATATGTCAGGAATACGATACCGAGTTTGAAATCAAGCAGGATTTAGAGAGAAAATCTTACACGCTCAACATTAAGAAGATAGGCGAAACTTTAAACCAAACCTTTGAATATGGAAAAGGAAATGGGCTTTATTCTTTAAGTAGAGAAAATGCGAATGATAATGTGGTTACTCGGCTTTATGTTTTCGGTTCAACGAATAATATCAAAAGTGGATACCGGGATTATTCACAGCGTTTGCGGTTGCCTATTTCTCACGGAAAGGATTATATTCAGGACGATGCTAAGGTAAAATTGTTCGGCTTAAAAGAGGGCGTTAAAAATTTTGACGACATCAAACCTACTTTTAAGGGGATAGTATCAGGCGTTACCAATTTGGAAAACGGCTCGCAAGAGATAGAAGTTTCTAATATGGACTTTGACCTGAACGAAACCGACAGCAACGGAACAAAGTATTTATTAAATGATACTCCTGCGAAGCTCCATATAAACAAAGGAAATTTGGCAGGATATGAATTTGAGTTGCTTAAAAACGGAGGCTACAACCACGCCACTAAGACTTTTAGAGTAAAGCAATTTACAGACGAAAGAGGACAAAAGTTTCCAGAAGCAGGTTCCGTGTTTTCATTTTCGGTTGGAGATGAGTTCACATTGTTAGATATTGCAATGCCCGAACAGTACATTACAAATGCCGAAAACAAACTCCTTGAAGAGGGACAAAAGGAATACGAAAAACAATCGGTAAACAACCTTAAATATAATTTAGAGTTAGACCCTCTGTATCTGCAACAGATAGGGGCTAATACGTCTATTTTCTTTAAAATTGGGGATTATATCCGTGTGATAGATGAACCGCTTAAAATAGATAAAACGACACGCATAGTAGATATTACGAGGGACTTATTAGATGAATATAATTACAAAATAGGCATTGCGGACACTTACGAAATCAGCTTTGTAGCAAGTCTACTTACCGAAATTAAGGACACTAAAACGGTTATAAAAACGCAGGAGCAAATTAACCGACAAAACTATTTAAACGGCTACCGTAATCAAAAGGAGTTTGAAGAAAATGTTTTTGATGCAGATGGCAATTTTGACCCAACCAAAATTAGACATCAAAGTATTGAAGCCTATATGCTTTCAACAGGGGCAAGAAGCCAACAATTTGCATTAGAAAATATAAGTCTGAATCCTAACATAGAGGGAAATCCTTCAAGAACATTTATTAGCGGCGGGAAATTGGTTCATTTTTCCTTAGAAGACGATATTAGAGAGTGGAACATATTGCCATACAGCCGTAATGACCTGTTAAATCAAGTTTACTATGTCTATGCAAAATGTTCAAGAGGAAATAGTATGGGGGTATGGCATATCACCACCGAGCAGATAAGGTTTGATAGTCGGTCAGATTATTATTATTTCTTGTGTTACTTACTCTACACACCAAAAGACGGTAAACGAGAAGCAGAAGCAATGTACGGTAATGTATTTATGCACGGAGGGCAAATAACGGCAGGGAGAATTAAATCGCTCAACGGACAAACCTATTTTGATTTGGATAGTGGGGAAATAGCAGGAACGATTAAGTTCAAAAGCGGTAATGGTTATGTGGAAGTTGGGAGTGCTATACAACAAGTAGTAGATGCGGTGAGTGTAGGAGGTAGAAACTTGATTAGAAACTCAAATATAAAAGGGGTAGTCGATGGATTCCCTGAACTTGAAATCATAGAACCTTTGGTTATAGGCAAGGAATACACACTATCGTTTATTGCAAAAAAAGTAGGGGAAGGGATAGGTTGGGTATCTGTGCAACCTCCCCTCGATTGGAGAGATGAAGTTTTAAATACTCGTGTTACTGTAACTTCAAACGAATACCAAGAGTATAAATCTACTTTTATAGCCAAATCCTCTCAAGGTCAAAAGGTTTGGATTTATTCGGCAGATTATTACAAGATTGATTTTAAAGGAGGTATAAAATTAGAAAAGGGTAATAAAGCTACCGACTGGACACCTGCACCAGAAGATGTGGAGCAGGAAATAATAGCGGTAAAGTCAAAAGTTAATCAAATAGATAATCTCGGTACAATGGCGTGGCAGAACTCTGTGGAAAAAGCGATGTTGGGTAGTACGATAGTACAAGGAGGCTATATCAAAACAGAGCTATTAAACGCTTCGGCAATAGTGAGTAATGGCGGAGGAGCGACTTCGGCAGAATTAAATAATGCCATCAATAGTATCATTATCGGGGGTCGGAATTTAGTATTAGATTCTAAGAAAACGATTACCCATTCAGATTATAATTTTAGCTATGAGTTTGAAGACGATTTTTCTAAAATACAAGGGCAGACAATCACTATTTCAATAGATATAGAGGTTTCGGATATAACTTCTGGAGTTAGAATAGGTTTTGAACCATCGTTTTTATTTCAAGACGGAAGTAGAATGTATTTGAGATGTTGGAAATACTTGAACTTGGGAGAAAGTTTTAAAGGGCGTATTTCAAAAACATACACTATTCCCAACAAACCAATTCAATCAATGGAACAAAAAGGTATGTATGTACAGGTTCAGGGGAGAATAACAAAAGTATCAAATCCAAAATTTGAATTGGGTAACAAAGCAACGGATTGGACACCAAATCCGTTGGATATAGAGGTACAGTTTGCCAACCTTCAACAAGGAATAGCTAATATGCAAACCTCTTTGTCTGACGTGAAGACCAAGACCGATAACTTCGCCTCTATTCAAGGCGGGTTGATGATGGCTAACTTAATGTCAGTCGGAAGCAACCAAGCTAATCAAAACGCTTTTATTAGTGGAATAACAGACGAGGGAGCAATGAGCGTGAGGTTTGGAGCAGGAGCTAACTATGCCAATAAACATAACGCCCCGTTTAGGGTGCTGGATAATGGGAAAGTTTATGGCTCTGATATGGAAATTACGGGTGGTAAAATAGCAAGGTTCAATATTAGCGGAAATACACTTTCGGGGCAAGGAATAGCAGACCCAAACGACTATTTAGAAATAAAGTCATCTGGAAGCATACTTTCATATAAAAAAAGTCTTTCATCTGGGAGAGAAAGCTATGCTCTCATCAATAATGATGATAGTATTTTAAACGGAAATAAAAACAATATACTTCGGCTCTGGGGGCGTGATGTGAACAATTACACGCCCTACAACGCTCTATCTATAAGGGCAGACGGACAGTATGCTACTGCCTTAAATATAGAATCGGGAGATATTCGTGTGGGTGGAGAGGTAGGATATACAGGTTCGGTCTTTTTAGGAAATAGACTAGTCTATATAAAAAATGGAATAATCATAAGAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f54d8d54f10a07a0949f97d006ed606abd38fb9e74808bf31ae9210a2ed8eee0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2595
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50